Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AL034408.1-202ENST00000636088 415 ntBASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 U6.106-201ENST00000636360 105 ntBASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC093849.1-201ENST00000563631 2209 ntBASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RLIMP1-201ENST00000339626 1680 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RNA5SP130-201ENST00000364431 114 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RNU6-1293P-201ENST00000384077 107 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 MIR183-201ENST00000384958 110 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 Y_RNA.581-201ENST00000391017 97 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AL139095.1-201ENST00000404326 391 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RNU6ATAC16P-201ENST00000408591 138 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RNU4-65P-201ENST00000410473 140 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 Y_RNA.626-201ENST00000411288 95 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RPL19P1-201ENST00000411635 428 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RPS15AP6-201ENST00000420703 385 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RPL23AP81-201ENST00000455252 467 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 IFITM8P-201ENST00000522529 394 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 MEG8-215ENST00000555354 469 ntTSL 3 BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 MIR5701-3-201ENST00000578890 82 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 CPDP1-201ENST00000579660 283 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 MIR5701-1-201ENST00000585138 82 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 MIR5701-2-201ENST00000615634 82 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RNU6-156P-201ENST00000621869 107 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 MIR3651-201ENST00000630427 90 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 ZNF299P-201ENST00000406845 1804 ntBASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RNU4-44P-201ENST00000363050 141 ntBASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RNU6-1243P-201ENST00000364028 107 ntBASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 Y_RNA.533-201ENST00000384596 114 ntBASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 Y_RNA.541-201ENST00000384640 113 ntBASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RPL23AP22-201ENST00000437556 453 ntBASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC127537.2-201ENST00000439258 465 ntBASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RPL23AP33-201ENST00000442301 452 ntBASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RNU6-677P-201ENST00000516914 101 ntBASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RN7SKP57-201ENST00000517248 293 ntBASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 MTND5P41-201ENST00000517498 206 ntBASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 IGHVII-53-1-201ENST00000519538 255 ntBASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC092470.1-201ENST00000546187 132 ntBASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AL606490.9-201ENST00000603331 271 ntBASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AL121917.1-203ENST00000605534 577 ntBASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.49□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 Y_RNA.76-201ENST00000362931 109 ntBASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 U3.13-201ENST00000364804 214 ntBASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RNU6-1303P-201ENST00000364841 107 ntBASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 SNORD73A-201ENST00000386062 65 ntBASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AL358472.1-201ENST00000431295 329 ntBASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 HMGN2P31-201ENST00000432430 273 ntBASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 PIGFP3-201ENST00000441918 722 ntBASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC136932.1-201ENST00000574771 208 ntBASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 164 ms