Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 MIR411-201ENST00000362239 96 ntBASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 Y_RNA.199-201ENST00000364014 102 ntBASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 RNA5SP366-201ENST00000365454 123 ntBASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 RNU6-1329P-201ENST00000365664 107 ntBASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 RNU2-20P-201ENST00000410425 191 ntBASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 COX6CP10-201ENST00000416832 224 ntBASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 RPL23AP33-201ENST00000442301 452 ntBASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 AP000926.1-201ENST00000479573 241 ntBASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 COX7A2P2-201ENST00000505291 250 ntBASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 AC008716.1-201ENST00000511084 513 ntBASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 AC004024.1-201ENST00000549244 247 ntBASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 AL670379.6-201ENST00000603753 252 ntBASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 AL670379.1-201ENST00000604752 252 ntBASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 AL670379.5-201ENST00000605253 252 ntBASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 AL670379.8-201ENST00000605353 252 ntBASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 AL670379.7-201ENST00000605823 252 ntBASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 MARK2P15-201ENST00000432204 2186 ntBASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC39Q9UFE4 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 SNORD50.2-201ENST00000365465 70 ntBASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 RNU6-516P-201ENST00000411381 104 ntBASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 COX6B1P7-201ENST00000430845 235 ntBASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 RPL23AP22-201ENST00000437556 453 ntBASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 RNU7-138P-201ENST00000459479 64 ntBASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 AC099522.1-202ENST00000514718 367 ntBASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 HIGD1AP3-201ENST00000515857 278 ntBASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 RNU6-911P-201ENST00000516523 104 ntBASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 RNU6-861P-201ENST00000516745 106 ntBASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 AC104576.1-201ENST00000524225 88 ntBASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 AC024405.2-202ENST00000532731 184 ntBASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 AC025884.1-201ENST00000556034 378 ntBASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 AC114781.5-201ENST00000615297 108 ntBASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 AC011944.2-201ENST00000624440 683 ntBASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC39Q9UFE4 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 AL359893.1-201ENST00000447628 1580 ntBASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 RNU6-1290P-201ENST00000362957 109 ntBASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 MIR628-201ENST00000385229 95 ntBASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 RPL23AP26-201ENST00000412728 464 ntBASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 RNU6-1338P-201ENST00000516328 91 ntBASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 Y_RNA.713-201ENST00000517013 96 ntBASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 GNRHR2P1-201ENST00000555315 631 ntBASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 AC004584.2-201ENST00000570407 410 ntBASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 AC022655.2-201ENST00000577280 318 ntBASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 MIR4643-201ENST00000577473 78 ntBASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 MIR4644-201ENST00000579929 84 ntBASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 MIR4273-201ENST00000582824 84 ntBASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 IPO5P1-202ENST00000600039 287 ntBASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC39Q9UFE4 IPO8P1-201ENST00000455509 3109 ntBASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 RNU1-76P-201ENST00000362903 159 ntBASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 RNU6-708P-201ENST00000384217 107 ntBASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 AL591704.1-201ENST00000432574 275 ntBASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 CKS1BP5-201ENST00000434172 273 ntBASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 NDUFB4P10-201ENST00000452541 359 ntBASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 RNA5SP246-201ENST00000458909 119 ntBASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 RPS23P5-201ENST00000495419 428 ntBASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 167.6 ms