Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL136097.1-201ENST00000456945 913 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 RN7SL93P-201ENST00000463035 293 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 RN7SL303P-201ENST00000469773 251 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 RN7SL432P-201ENST00000484057 298 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 AC008958.1-201ENST00000511047 682 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 IGKV2-23-201ENST00000518729 323 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 AC144568.1-201ENST00000520139 137 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 HIGD1AP5-201ENST00000529959 259 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 DLEU2_2.2-201ENST00000615474 90 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 AC021753.1-201ENST00000635724 168 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 AL773545.4-201ENST00000637262 310 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 AL513478.4-201ENST00000641636 310 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 AL136964.1-201ENST00000622038 2990 ntBASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC39Q9UFE4 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 RNU6-1266P-201ENST00000362794 105 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 RNU1-132P-201ENST00000364300 164 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 RNU6-81P-201ENST00000365608 104 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 U3.22-201ENST00000391120 215 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 AL139039.1-201ENST00000401900 692 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 Z98941.1-201ENST00000407764 100 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 RN7SKP159-201ENST00000410657 292 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 RPL35AP22-201ENST00000436855 335 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 RPL29P29-201ENST00000448725 423 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 TPT1P13-201ENST00000449760 499 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 PPIAP3-201ENST00000450588 505 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 FABP5P13-201ENST00000452144 328 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 RPS27AP1-201ENST00000475545 471 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 RN7SL459P-201ENST00000481078 302 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 AC018437.1-201ENST00000492214 406 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 AC135721.1-201ENST00000497954 479 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 RNU6-1278P-201ENST00000516130 107 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 AP006587.4-201ENST00000526053 529 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 AC092470.1-201ENST00000546187 132 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 AC068790.4-201ENST00000602474 263 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 MIR6820-201ENST00000611508 62 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 MIR1244-1-201ENST00000612829 85 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 MIR1244-3-201ENST00000635744 85 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 MIR1244-2-201ENST00000636449 85 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 MIR1244-4-202ENST00000636813 85 ntBASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC39Q9UFE4 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 snoU2_19.2-201ENST00000363024 80 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 RNU1-18P-201ENST00000363062 164 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 RNU6-1284P-201ENST00000363701 100 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 RNU6-1078P-201ENST00000364522 103 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 U3.15-201ENST00000365398 212 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 RNY1P5-201ENST00000383890 115 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 HMGN2P8-201ENST00000391458 268 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 MRPL35P1-201ENST00000404272 572 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 RNU2-15P-201ENST00000410692 191 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 EIF4EP2-201ENST00000422816 654 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 RPS17P13-201ENST00000448974 407 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 AC109327.1-201ENST00000471666 403 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 AC074198.2-201ENST00000508153 258 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 RNU6-346P-201ENST00000516288 111 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 Y_RNA.687-201ENST00000516558 91 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 MIR4277-201ENST00000578298 84 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 AC008745.1-201ENST00000604064 271 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 AL158032.1-201ENST00000605401 106 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 AL589994.2-201ENST00000621124 579 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 AC244205.2-202ENST00000635781 342 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 HSPA8P4-201ENST00000511877 1920 ntBASIC4.7□□□□□ -1.66
CCDC39Q9UFE4 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 228 ms