Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC034114.1-201ENST00000520293 285 ntBASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AP002392.1-201ENST00000537692 208 ntBASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RPL21P7-201ENST00000557463 483 ntBASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC006363.1-201ENST00000603806 463 ntBASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 EIF2AP4-201ENST00000424793 1781 ntBASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 OSBPL9P4-201ENST00000371707 1800 ntBASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RNY3P11-201ENST00000364153 102 ntBASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 SNORA73.2-201ENST00000364946 201 ntBASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 SNORD50.2-201ENST00000365465 70 ntBASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RNY1P5-201ENST00000383890 115 ntBASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RNA5SP107-201ENST00000411358 122 ntBASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 BX276092.3-201ENST00000424182 230 ntBASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RNA5SP519-201ENST00000516480 119 ntBASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RN7SKP82-201ENST00000516786 223 ntBASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 CBX3P4-201ENST00000538909 354 ntBASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC073410.2-201ENST00000603240 332 ntBASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AP001485.1-201ENST00000604799 199 ntBASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC5.73□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 MIR383-201ENST00000362257 73 ntBASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RNA5SP307-201ENST00000362863 116 ntBASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 Y_RNA.269-201ENST00000364685 89 ntBASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RNU6-596P-201ENST00000365395 98 ntBASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC005094.1-201ENST00000440420 368 ntBASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RPL29P29-201ENST00000448725 423 ntBASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RNU6-1278P-201ENST00000516130 107 ntBASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 Y_RNA.683-201ENST00000516508 93 ntBASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 STX3-204ENST00000530221 534 ntTSL 5 BASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC100770.1-201ENST00000532310 322 ntBASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC006023.2-201ENST00000609916 167 ntBASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AL590099.1-201ENST00000615276 138 ntBASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 SMCR2_2.1-201ENST00000619783 161 ntBASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC5.72□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC5.71□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 Y_RNA.105-201ENST00000363182 111 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 Y_RNA.277-201ENST00000364754 102 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU6-715P-201ENST00000365204 103 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 MIR628-201ENST00000385229 95 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL590704.1-201ENST00000402856 794 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU2-33P-201ENST00000410344 192 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU6-121P-201ENST00000410525 99 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 SYF2P2-201ENST00000417620 583 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU7-187P-201ENST00000458985 68 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AP000926.1-201ENST00000479573 241 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RN7SL432P-201ENST00000484057 298 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AP001086.1-201ENST00000494882 321 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC092436.3-201ENST00000511788 257 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU6-911P-201ENST00000516523 104 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC087441.2-201ENST00000529141 262 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL133271.1-201ENST00000538229 291 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 CR392039.4-201ENST00000624968 501 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL450472.1-202ENST00000637286 180 ntBASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.71□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 186.1 ms