Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RNU2-25P-201ENST00000411041 191 ntBASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 AC027644.1-201ENST00000419595 298 ntBASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 AL353691.1-201ENST00000451332 387 ntBASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 MTCO3P27-201ENST00000514397 196 ntBASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 SETP7-201ENST00000552169 453 ntBASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 AC012669.1-201ENST00000603209 283 ntBASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 AC016727.2-201ENST00000603988 621 ntBASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 AC012443.1-201ENST00000605605 231 ntBASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 AC097504.2-201ENST00000608088 454 ntBASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 AC008133.2-201ENST00000624540 351 ntBASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.9□□□□□ -2.11
SHANK3Q9BYB0 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 Y_RNA.25-201ENST00000362528 102 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 RNU5B-4P-201ENST00000363508 111 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 SNORA6-201ENST00000384033 151 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 RPL22P22-201ENST00000395439 379 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 RPS4XP3-201ENST00000398541 413 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 AL356131.1-201ENST00000405826 414 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 SUMO2P12-201ENST00000405924 140 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 RNU6-575P-201ENST00000411326 105 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 Z85995.1-201ENST00000415547 335 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 RPL30P14-201ENST00000482744 348 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 AC022483.1-201ENST00000514020 567 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 SNORA70.16-201ENST00000516390 95 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 RNU6-1282P-201ENST00000516735 96 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 MGST1-215ENST00000540056 546 ntTSL 3 BASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 AC109446.2-201ENST00000567872 497 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 MTATP6P2-201ENST00000603319 678 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 AC106900.2-201ENST00000604994 317 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 AL592148.2-201ENST00000612210 372 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 AC018926.1-201ENST00000616335 435 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 AC007275.1-201ENST00000621243 671 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 AC011330.2-201ENST00000621680 635 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 AC004009.2-201ENST00000623016 728 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 AP000676.4-201ENST00000624659 623 ntBASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
SHANK3Q9BYB0 RNU5D-1-201ENST00000363299 116 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 SNORA67.6-201ENST00000391093 99 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 MTND2P5-201ENST00000432656 1006 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 MTND4P6-201ENST00000438297 472 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 SNORD121B-201ENST00000458838 81 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 HAR1A.1-201ENST00000459583 118 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 RNU6-1261P-201ENST00000517194 104 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 SUB1P1-201ENST00000524415 382 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 OR5AQ1P-201ENST00000527596 927 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 AC092451.2-201ENST00000538746 658 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 AC090666.1-201ENST00000578241 445 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 DUXAP11-201ENST00000603858 526 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 AP002802.2-201ENST00000605877 235 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 AC008083.4-201ENST00000615076 444 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 MIR203B-201ENST00000636080 86 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 MIR4275-201ENST00000636486 87 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 MKKS-204ENST00000639674 192 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 AC087359.1-201ENST00000508335 1740 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 DDX43P2-201ENST00000604753 1354 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 SNRPEP3-201ENST00000338402 276 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 RNU5B-1-201ENST00000363286 116 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 RNU6-1080P-201ENST00000383982 107 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 AL592310.1-201ENST00000414330 671 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 AC018630.2-202ENST00000422992 927 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 DPRXP1-201ENST00000426312 460 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 PSMA6P3-201ENST00000428242 164 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 VN1R10P-201ENST00000447106 875 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 RPL39P6-201ENST00000448289 150 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 MTND2P31-201ENST00000512602 616 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 RNA5SP337-201ENST00000517007 109 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 AC125611.1-201ENST00000549563 229 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 HSPE1P3-201ENST00000559254 309 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 167.6 ms