Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 GHR-202ENST00000357703 4316 ntTSL 5 BASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 GHR-213ENST00000622294 4312 ntTSL 5 BASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC139769.1-204ENST00000472297 1931 ntBASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RNU6-511P-201ENST00000363496 107 ntBASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RNU6-378P-201ENST00000384324 107 ntBASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 MIR649-201ENST00000384843 97 ntBASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RNU6-278P-201ENST00000390945 109 ntBASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 SAR1AP2-201ENST00000392696 594 ntBASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 FTH1P1-201ENST00000437933 532 ntBASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RPS26P2-201ENST00000440331 348 ntBASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC021382.1-201ENST00000483523 359 ntBASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC105137.1-201ENST00000484355 562 ntBASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC108860.1-201ENST00000484521 383 ntBASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 SNORA25.11-201ENST00000515935 105 ntBASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 SNORA40.15-201ENST00000516884 107 ntBASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RN7SKP289-201ENST00000517244 295 ntBASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 SUB1P3-201ENST00000564581 315 ntBASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC011494.1-201ENST00000596454 237 ntBASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC091979.2-201ENST00000607514 214 ntBASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 PTER-201ENST00000298942 3448 ntTSL 5 BASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RNU6-1081P-201ENST00000384537 107 ntBASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 HIST1H2APS3-201ENST00000403259 134 ntBASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RN7SKP267-201ENST00000410381 285 ntBASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RPL31P45-201ENST00000419532 356 ntBASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 ELOCP20-201ENST00000422460 345 ntBASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 MRPS18CP6-201ENST00000423587 223 ntBASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RPL21P89-201ENST00000444021 467 ntBASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC026801.1-201ENST00000497178 464 ntBASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC015795.1-201ENST00000513669 327 ntBASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC090615.1-201ENST00000577519 154 ntBASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 COX6CP3-201ENST00000580869 223 ntBASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC012433.1-201ENST00000588916 398 ntBASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 PABPC1P7-201ENST00000413177 1513 ntBASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC025031.4-201ENST00000621248 3271 ntBASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC5.96□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 MIR372-201ENST00000362225 67 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-545P-201ENST00000362681 104 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 Y_RNA.234-201ENST00000364409 97 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 Y_RNA.297-201ENST00000364950 91 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 Y_RNA.314-201ENST00000365114 102 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-338P-201ENST00000383888 105 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 Y_RNA.551-201ENST00000384661 102 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC110754.1-201ENST00000399740 601 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RAC1P3-201ENST00000416129 580 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RPL23AP69-201ENST00000431134 458 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 MTCO3P29-201ENST00000432119 779 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 TRBV26-201ENST00000456572 344 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AL445433.1-201ENST00000457507 257 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 SCARNA18-201ENST00000459004 134 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC104472.2-201ENST00000469035 601 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC068305.1-201ENST00000497406 726 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC104806.1-201ENST00000508720 308 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU5B-3P-201ENST00000516601 115 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-1212P-201ENST00000517023 104 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC130289.1-201ENST00000577321 73 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RPL23AP92-201ENST00000603609 255 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 MIR4272-201ENST00000635924 64 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.96□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 Z95114.1-201ENST00000624264 14574 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 BDP1P-201ENST00000582658 1990 ntBASIC5.95□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 289.3 ms