Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Ushbp1Q8R370 Mir6538-201ENSMUST00000183713 110 ntBASIC26.12■■□□□ 1.77
Ushbp1Q8R370 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Ushbp1Q8R370 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Ushbp1Q8R370 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Ushbp1Q8R370 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
Ushbp1Q8R370 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Ushbp1Q8R370 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC26.11■■□□□ 1.77
Ushbp1Q8R370 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Ushbp1Q8R370 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
Ushbp1Q8R370 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Ushbp1Q8R370 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC26.09■■□□□ 1.77
Ushbp1Q8R370 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Ushbp1Q8R370 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Ushbp1Q8R370 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Ushbp1Q8R370 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC26.07■■□□□ 1.76
Ushbp1Q8R370 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC26.07■■□□□ 1.76
Ushbp1Q8R370 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC26.07■■□□□ 1.76
Ushbp1Q8R370 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC26.07■■□□□ 1.76
Ushbp1Q8R370 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
Ushbp1Q8R370 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC26.06■■□□□ 1.76
Ushbp1Q8R370 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Ushbp1Q8R370 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
Ushbp1Q8R370 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC26.04■■□□□ 1.76
Ushbp1Q8R370 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
Ushbp1Q8R370 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Ushbp1Q8R370 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC26.03■■□□□ 1.76
Ushbp1Q8R370 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Ushbp1Q8R370 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Ushbp1Q8R370 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
Ushbp1Q8R370 Gm37847-201ENSMUST00000192163 1497 ntBASIC26.02■■□□□ 1.76
Ushbp1Q8R370 Gm31748-201ENSMUST00000194938 1497 ntBASIC26.02■■□□□ 1.76
Ushbp1Q8R370 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Ushbp1Q8R370 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Ushbp1Q8R370 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC26■■□□□ 1.75
Ushbp1Q8R370 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Ushbp1Q8R370 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC25.99■■□□□ 1.75
Ushbp1Q8R370 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
Ushbp1Q8R370 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Ushbp1Q8R370 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Ushbp1Q8R370 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Ushbp1Q8R370 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Ushbp1Q8R370 Cap2-205ENSMUST00000225824 1634 ntBASIC25.97■■□□□ 1.75
Ushbp1Q8R370 Particl-201ENSMUST00000205370 1560 ntBASIC25.97■■□□□ 1.75
Ushbp1Q8R370 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
Ushbp1Q8R370 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
Ushbp1Q8R370 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC25.96■■□□□ 1.75
Ushbp1Q8R370 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC25.95■■□□□ 1.75
Ushbp1Q8R370 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC25.95■■□□□ 1.74
Ushbp1Q8R370 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
Ushbp1Q8R370 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
Ushbp1Q8R370 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Ushbp1Q8R370 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
Ushbp1Q8R370 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
Ushbp1Q8R370 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Ushbp1Q8R370 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Ushbp1Q8R370 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC25.91■■□□□ 1.74
Ushbp1Q8R370 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ushbp1Q8R370 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ushbp1Q8R370 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ushbp1Q8R370 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ushbp1Q8R370 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ushbp1Q8R370 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ushbp1Q8R370 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ushbp1Q8R370 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ushbp1Q8R370 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
Ushbp1Q8R370 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Ushbp1Q8R370 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.88■■□□□ 1.73
Ushbp1Q8R370 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Ushbp1Q8R370 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Ushbp1Q8R370 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC25.87■■□□□ 1.73
Ushbp1Q8R370 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Ushbp1Q8R370 AC131739.1-201ENSMUST00000221692 1245 ntBASIC25.86■■□□□ 1.73
Ushbp1Q8R370 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Ushbp1Q8R370 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
Ushbp1Q8R370 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Ushbp1Q8R370 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Ushbp1Q8R370 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
Ushbp1Q8R370 Gm6311-201ENSMUST00000073790 878 ntBASIC25.85■■□□□ 1.73
Ushbp1Q8R370 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Ushbp1Q8R370 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Ushbp1Q8R370 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Ushbp1Q8R370 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Ushbp1Q8R370 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.72
Ushbp1Q8R370 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
Ushbp1Q8R370 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Ushbp1Q8R370 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Ushbp1Q8R370 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC25.82■■□□□ 1.72
Ushbp1Q8R370 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
Ushbp1Q8R370 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Ushbp1Q8R370 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Ushbp1Q8R370 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Ushbp1Q8R370 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Ushbp1Q8R370 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
Ushbp1Q8R370 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
Ushbp1Q8R370 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC25.77■■□□□ 1.72
Ushbp1Q8R370 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Ushbp1Q8R370 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Ushbp1Q8R370 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
Ushbp1Q8R370 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC25.77■■□□□ 1.72
Retrieved 100 of 76,532 protein–RNA pairs in 131.8 ms