Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Limch1Q3UH68 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC27.35■■□□□ 1.97
Limch1Q3UH68 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC27.35■■□□□ 1.97
Limch1Q3UH68 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
Limch1Q3UH68 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Limch1Q3UH68 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC27.34■■□□□ 1.97
Limch1Q3UH68 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Limch1Q3UH68 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Limch1Q3UH68 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
Limch1Q3UH68 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC27.33■■□□□ 1.97
Limch1Q3UH68 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
Limch1Q3UH68 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC27.31■■□□□ 1.96
Limch1Q3UH68 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC27.31■■□□□ 1.96
Limch1Q3UH68 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC27.31■■□□□ 1.96
Limch1Q3UH68 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
Limch1Q3UH68 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Limch1Q3UH68 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC27.3■■□□□ 1.96
Limch1Q3UH68 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Limch1Q3UH68 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
Limch1Q3UH68 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Limch1Q3UH68 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Limch1Q3UH68 Gm37847-201ENSMUST00000192163 1497 ntBASIC27.27■■□□□ 1.96
Limch1Q3UH68 Gm31748-201ENSMUST00000194938 1497 ntBASIC27.27■■□□□ 1.96
Limch1Q3UH68 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Limch1Q3UH68 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
Limch1Q3UH68 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
Limch1Q3UH68 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
Limch1Q3UH68 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
Limch1Q3UH68 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Limch1Q3UH68 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Limch1Q3UH68 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC27.24■■□□□ 1.95
Limch1Q3UH68 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
Limch1Q3UH68 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Limch1Q3UH68 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
Limch1Q3UH68 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
Limch1Q3UH68 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Limch1Q3UH68 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Limch1Q3UH68 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Limch1Q3UH68 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC27.22■■□□□ 1.95
Limch1Q3UH68 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC27.22■■□□□ 1.95
Limch1Q3UH68 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
Limch1Q3UH68 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Limch1Q3UH68 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC27.21■■□□□ 1.95
Limch1Q3UH68 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC27.21■■□□□ 1.95
Limch1Q3UH68 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Limch1Q3UH68 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
Limch1Q3UH68 Particl-201ENSMUST00000205370 1560 ntBASIC27.21■■□□□ 1.95
Limch1Q3UH68 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
Limch1Q3UH68 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Limch1Q3UH68 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC27.2■■□□□ 1.94
Limch1Q3UH68 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC27.19■■□□□ 1.94
Limch1Q3UH68 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Limch1Q3UH68 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
Limch1Q3UH68 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Limch1Q3UH68 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Limch1Q3UH68 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Limch1Q3UH68 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC27.18■■□□□ 1.94
Limch1Q3UH68 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Limch1Q3UH68 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Limch1Q3UH68 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC27.17■■□□□ 1.94
Limch1Q3UH68 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Limch1Q3UH68 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Limch1Q3UH68 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC27.16■■□□□ 1.94
Limch1Q3UH68 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Limch1Q3UH68 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Limch1Q3UH68 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Limch1Q3UH68 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
Limch1Q3UH68 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
Limch1Q3UH68 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
Limch1Q3UH68 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC27.14■■□□□ 1.94
Limch1Q3UH68 Mir6538-201ENSMUST00000183713 110 ntBASIC27.13■■□□□ 1.93
Limch1Q3UH68 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC27.13■■□□□ 1.93
Limch1Q3UH68 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC27.12■■□□□ 1.93
Limch1Q3UH68 Gm11175-201ENSMUST00000116172 543 ntBASIC27.12■■□□□ 1.93
Limch1Q3UH68 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
Limch1Q3UH68 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
Limch1Q3UH68 AC131739.1-201ENSMUST00000221692 1245 ntBASIC27.11■■□□□ 1.93
Limch1Q3UH68 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
Limch1Q3UH68 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC27.1■■□□□ 1.93
Limch1Q3UH68 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC27.09■■□□□ 1.93
Limch1Q3UH68 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC27.09■■□□□ 1.93
Limch1Q3UH68 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
Limch1Q3UH68 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
Limch1Q3UH68 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC27.08■■□□□ 1.93
Limch1Q3UH68 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC27.08■■□□□ 1.93
Limch1Q3UH68 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Limch1Q3UH68 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Limch1Q3UH68 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Limch1Q3UH68 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Limch1Q3UH68 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC27.07■■□□□ 1.92
Limch1Q3UH68 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
Limch1Q3UH68 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
Limch1Q3UH68 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC27.06■■□□□ 1.92
Limch1Q3UH68 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC27.06■■□□□ 1.92
Limch1Q3UH68 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Limch1Q3UH68 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
Limch1Q3UH68 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Limch1Q3UH68 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Limch1Q3UH68 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC27.02■■□□□ 1.92
Limch1Q3UH68 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms