Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trbv1A0A0B4J1G7 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trbv1A0A0B4J1G7 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trbv1A0A0B4J1G7 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trbv1A0A0B4J1G7 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trbv1A0A0B4J1G7 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trbv1A0A0B4J1G7 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC18.1■□□□□ 0.49
Trbv1A0A0B4J1G7 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trbv1A0A0B4J1G7 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trbv1A0A0B4J1G7 Gm9397-201ENSMUST00000200125 605 ntBASIC18.08■□□□□ 0.48
Trbv1A0A0B4J1G7 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trbv1A0A0B4J1G7 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trbv1A0A0B4J1G7 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trbv1A0A0B4J1G7 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trbv1A0A0B4J1G7 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trbv1A0A0B4J1G7 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trbv1A0A0B4J1G7 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trbv1A0A0B4J1G7 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trbv1A0A0B4J1G7 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv1A0A0B4J1G7 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv1A0A0B4J1G7 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv1A0A0B4J1G7 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv1A0A0B4J1G7 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv1A0A0B4J1G7 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv1A0A0B4J1G7 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv1A0A0B4J1G7 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC18.06■□□□□ 0.48
Trbv1A0A0B4J1G7 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv1A0A0B4J1G7 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv1A0A0B4J1G7 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Trbv1A0A0B4J1G7 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv1A0A0B4J1G7 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv1A0A0B4J1G7 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Trbv1A0A0B4J1G7 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv1A0A0B4J1G7 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trbv1A0A0B4J1G7 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC18.04■□□□□ 0.48
Trbv1A0A0B4J1G7 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trbv1A0A0B4J1G7 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trbv1A0A0B4J1G7 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trbv1A0A0B4J1G7 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trbv1A0A0B4J1G7 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trbv1A0A0B4J1G7 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trbv1A0A0B4J1G7 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trbv1A0A0B4J1G7 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Trbv1A0A0B4J1G7 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv1A0A0B4J1G7 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC18.03■□□□□ 0.48
Trbv1A0A0B4J1G7 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC18.03■□□□□ 0.48
Trbv1A0A0B4J1G7 Gm45855-201ENSMUST00000212546 880 ntBASIC18.03■□□□□ 0.48
Trbv1A0A0B4J1G7 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv1A0A0B4J1G7 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trbv1A0A0B4J1G7 Gm43863-201ENSMUST00000203822 1192 ntBASIC18.02■□□□□ 0.48
Trbv1A0A0B4J1G7 Pcf11-205ENSMUST00000208255 1720 ntBASIC18.02■□□□□ 0.48
Trbv1A0A0B4J1G7 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Trbv1A0A0B4J1G7 Gm24970-201ENSMUST00000175582 82 ntBASIC18.01■□□□□ 0.47
Trbv1A0A0B4J1G7 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trbv1A0A0B4J1G7 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Trbv1A0A0B4J1G7 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
Trbv1A0A0B4J1G7 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trbv1A0A0B4J1G7 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trbv1A0A0B4J1G7 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Trbv1A0A0B4J1G7 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Trbv1A0A0B4J1G7 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC17.99■□□□□ 0.47
Trbv1A0A0B4J1G7 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trbv1A0A0B4J1G7 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trbv1A0A0B4J1G7 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trbv1A0A0B4J1G7 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv1A0A0B4J1G7 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv1A0A0B4J1G7 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC17.97■□□□□ 0.47
Trbv1A0A0B4J1G7 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trbv1A0A0B4J1G7 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC17.97■□□□□ 0.47
Trbv1A0A0B4J1G7 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trbv1A0A0B4J1G7 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC17.96■□□□□ 0.47
Trbv1A0A0B4J1G7 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trbv1A0A0B4J1G7 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trbv1A0A0B4J1G7 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Trbv1A0A0B4J1G7 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trbv1A0A0B4J1G7 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trbv1A0A0B4J1G7 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.46
Trbv1A0A0B4J1G7 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv1A0A0B4J1G7 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv1A0A0B4J1G7 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
Trbv1A0A0B4J1G7 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv1A0A0B4J1G7 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC17.95■□□□□ 0.46
Trbv1A0A0B4J1G7 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
Trbv1A0A0B4J1G7 AC157572.2-201ENSMUST00000226970 908 ntBASIC17.95■□□□□ 0.46
Trbv1A0A0B4J1G7 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Trbv1A0A0B4J1G7 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv1A0A0B4J1G7 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv1A0A0B4J1G7 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv1A0A0B4J1G7 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Trbv1A0A0B4J1G7 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trbv1A0A0B4J1G7 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Trbv1A0A0B4J1G7 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trbv1A0A0B4J1G7 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trbv1A0A0B4J1G7 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trbv1A0A0B4J1G7 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC17.92■□□□□ 0.46
Trbv1A0A0B4J1G7 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trbv1A0A0B4J1G7 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Trbv1A0A0B4J1G7 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trbv1A0A0B4J1G7 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trbv1A0A0B4J1G7 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms