Protein–RNA interactions for Protein: A0A075B6B2

Trav6n-6, T cell receptor alpha variable 6N-6 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6n-6A0A075B6B2 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav6n-6A0A075B6B2 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav6n-6A0A075B6B2 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC17.17■□□□□ 0.34
Trav6n-6A0A075B6B2 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
Trav6n-6A0A075B6B2 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC17.17■□□□□ 0.34
Trav6n-6A0A075B6B2 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav6n-6A0A075B6B2 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trav6n-6A0A075B6B2 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav6n-6A0A075B6B2 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6n-6A0A075B6B2 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6n-6A0A075B6B2 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6n-6A0A075B6B2 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Trav6n-6A0A075B6B2 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6n-6A0A075B6B2 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6n-6A0A075B6B2 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Trav6n-6A0A075B6B2 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trav6n-6A0A075B6B2 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
Trav6n-6A0A075B6B2 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav6n-6A0A075B6B2 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav6n-6A0A075B6B2 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC17.14■□□□□ 0.33
Trav6n-6A0A075B6B2 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav6n-6A0A075B6B2 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC17.13■□□□□ 0.33
Trav6n-6A0A075B6B2 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trav6n-6A0A075B6B2 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav6n-6A0A075B6B2 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6n-6A0A075B6B2 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6n-6A0A075B6B2 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
Trav6n-6A0A075B6B2 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6n-6A0A075B6B2 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6n-6A0A075B6B2 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6n-6A0A075B6B2 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Trav6n-6A0A075B6B2 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6n-6A0A075B6B2 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Trav6n-6A0A075B6B2 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav6n-6A0A075B6B2 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC17.11■□□□□ 0.33
Trav6n-6A0A075B6B2 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav6n-6A0A075B6B2 AC157572.2-201ENSMUST00000226970 908 ntBASIC17.11■□□□□ 0.33
Trav6n-6A0A075B6B2 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav6n-6A0A075B6B2 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC17.11■□□□□ 0.33
Trav6n-6A0A075B6B2 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trav6n-6A0A075B6B2 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
Trav6n-6A0A075B6B2 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Trav6n-6A0A075B6B2 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
Trav6n-6A0A075B6B2 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6n-6A0A075B6B2 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC17.09■□□□□ 0.33
Trav6n-6A0A075B6B2 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC17.09■□□□□ 0.33
Trav6n-6A0A075B6B2 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6n-6A0A075B6B2 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6n-6A0A075B6B2 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6n-6A0A075B6B2 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
Trav6n-6A0A075B6B2 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6n-6A0A075B6B2 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6n-6A0A075B6B2 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC17.09■□□□□ 0.33
Trav6n-6A0A075B6B2 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trav6n-6A0A075B6B2 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Trav6n-6A0A075B6B2 Gm6277-202ENSMUST00000224036 2779 ntBASIC17.08■□□□□ 0.32
Trav6n-6A0A075B6B2 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
Trav6n-6A0A075B6B2 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav6n-6A0A075B6B2 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trav6n-6A0A075B6B2 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Trav6n-6A0A075B6B2 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav6n-6A0A075B6B2 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav6n-6A0A075B6B2 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC17.06■□□□□ 0.32
Trav6n-6A0A075B6B2 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trav6n-6A0A075B6B2 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav6n-6A0A075B6B2 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC17.05■□□□□ 0.32
Trav6n-6A0A075B6B2 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6n-6A0A075B6B2 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6n-6A0A075B6B2 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Trav6n-6A0A075B6B2 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6n-6A0A075B6B2 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6n-6A0A075B6B2 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Trav6n-6A0A075B6B2 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6n-6A0A075B6B2 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6n-6A0A075B6B2 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC17.03■□□□□ 0.32
Trav6n-6A0A075B6B2 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6n-6A0A075B6B2 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6n-6A0A075B6B2 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Trav6n-6A0A075B6B2 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6n-6A0A075B6B2 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6n-6A0A075B6B2 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6n-6A0A075B6B2 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Trav6n-6A0A075B6B2 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trav6n-6A0A075B6B2 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Trav6n-6A0A075B6B2 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trav6n-6A0A075B6B2 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trav6n-6A0A075B6B2 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.31
Trav6n-6A0A075B6B2 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6n-6A0A075B6B2 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6n-6A0A075B6B2 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6n-6A0A075B6B2 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC17.01■□□□□ 0.31
Trav6n-6A0A075B6B2 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6n-6A0A075B6B2 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6n-6A0A075B6B2 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trav6n-6A0A075B6B2 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trav6n-6A0A075B6B2 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
Trav6n-6A0A075B6B2 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav6n-6A0A075B6B2 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC16.99■□□□□ 0.31
Trav6n-6A0A075B6B2 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav6n-6A0A075B6B2 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC16.99■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 119.7 ms