Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 AL353597.2-202ENST00000434901 373 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 RPL23AP24-201ENST00000458203 385 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 U8.20-201ENST00000459445 131 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 RPL21P126-201ENST00000470049 478 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 AC126389.1-201ENST00000477436 290 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 AC083904.1-201ENST00000487828 231 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.83□□□□□ -1.64
EPHB3P54753 AC083829.1-201ENST00000503756 657 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 AC026782.1-201ENST00000512952 449 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 RN7SKP122-201ENST00000515923 296 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 RNU6-976P-201ENST00000516086 111 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 RNU6-1271P-201ENST00000517049 105 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 SOD1P3-201ENST00000518682 454 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 AP000907.2-201ENST00000530827 353 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 AP000889.2-201ENST00000532684 490 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 CYCSP28-201ENST00000534284 321 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
EPHB3P54753 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC4.83□□□□□ -1.64
EPHB3P54753 IMMP1LP2-201ENST00000552954 492 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.83□□□□□ -1.64
EPHB3P54753 OR4K8P-201ENST00000578842 1048 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 MIR3942-201ENST00000585264 109 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.83□□□□□ -1.64
EPHB3P54753 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.83□□□□□ -1.64
EPHB3P54753 uc_338.12-201ENST00000616344 181 ntBASIC4.83□□□□□ -1.64
EPHB3P54753 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
EPHB3P54753 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
EPHB3P54753 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
EPHB3P54753 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
EPHB3P54753 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
EPHB3P54753 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
EPHB3P54753 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
EPHB3P54753 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.82□□□□□ -1.64
EPHB3P54753 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
EPHB3P54753 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
EPHB3P54753 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.82□□□□□ -1.64
EPHB3P54753 Y_RNA.22-201ENST00000362492 102 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 Y_RNA.47-201ENST00000362697 108 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 RNU6-552P-201ENST00000362869 119 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 RNA5SP509-201ENST00000364577 119 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 Y_RNA.476-201ENST00000384347 108 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 RNU6-1222P-201ENST00000384615 107 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
EPHB3P54753 RNU6-903P-201ENST00000391270 109 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 RPL36AP36-201ENST00000418616 301 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.82□□□□□ -1.64
EPHB3P54753 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.82□□□□□ -1.64
EPHB3P54753 RPS12P10-201ENST00000427031 377 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 AC011998.1-201ENST00000433403 117 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 AC093156.1-201ENST00000440382 670 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 RPL23AP93-201ENST00000440847 484 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.82□□□□□ -1.64
EPHB3P54753 PRPS1P1-201ENST00000445305 876 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 AL035666.1-201ENST00000446195 348 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.82□□□□□ -1.64
EPHB3P54753 NANOGP10-201ENST00000453325 895 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 MTCO3P10-201ENST00000455912 772 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 Y_RNA.653-201ENST00000459091 95 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 RPL7L1P8-201ENST00000469911 741 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 AP000893.1-201ENST00000474462 794 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 AC090686.1-201ENST00000481577 749 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 HMGB1P30-201ENST00000492455 606 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.82□□□□□ -1.64
EPHB3P54753 AC026801.2-201ENST00000515352 425 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 RNU6-1088P-201ENST00000516850 104 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 IGLVIV-65-201ENST00000517313 360 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 MYL12AP1-201ENST00000518490 515 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 AP000827.1-201ENST00000527814 258 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.82□□□□□ -1.64
EPHB3P54753 AC093591.2-201ENST00000565254 3843 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC4.82□□□□□ -1.64
EPHB3P54753 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.82□□□□□ -1.64
EPHB3P54753 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC4.82□□□□□ -1.64
EPHB3P54753 AL590392.1-201ENST00000604960 446 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 AL592436.1-201ENST00000605135 558 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.82□□□□□ -1.64
EPHB3P54753 AC083806.3-201ENST00000614016 455 ntBASIC4.82□□□□□ -1.64
EPHB3P54753 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.82□□□□□ -1.64
EPHB3P54753 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
EPHB3P54753 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
EPHB3P54753 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
EPHB3P54753 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
EPHB3P54753 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
EPHB3P54753 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
EPHB3P54753 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
EPHB3P54753 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
EPHB3P54753 MTND5P19-201ENST00000424872 1794 ntBASIC4.81□□□□□ -1.64
EPHB3P54753 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
EPHB3P54753 AL451142.2-201ENST00000429076 2090 ntBASIC4.81□□□□□ -1.64
EPHB3P54753 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
EPHB3P54753 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
EPHB3P54753 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
EPHB3P54753 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
EPHB3P54753 AC011755.1-201ENST00000623763 2049 ntBASIC4.81□□□□□ -1.64
EPHB3P54753 XPOTP1-201ENST00000443317 2398 ntBASIC4.81□□□□□ -1.64
EPHB3P54753 RNU4-44P-201ENST00000363050 141 ntBASIC4.81□□□□□ -1.64
EPHB3P54753 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
EPHB3P54753 RNU6-1032P-201ENST00000384100 107 ntBASIC4.81□□□□□ -1.64
EPHB3P54753 RNU4-70P-201ENST00000384579 139 ntBASIC4.81□□□□□ -1.64
EPHB3P54753 AL356421.1-201ENST00000403255 413 ntBASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 178.4 ms