Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC018634.1-201ENST00000437554 401 ntBASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 AC011037.1-201ENST00000483964 558 ntBASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 AC117522.2-201ENST00000510049 657 ntBASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 OR4H12P-201ENST00000556269 907 ntBASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 MIR5092-201ENST00000583139 88 ntBASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 RPL9P7-201ENST00000330965 580 ntBASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 AC108667.1-201ENST00000428618 249 ntBASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 BLNK-209ENST00000495266 440 ntTSL 5 BASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 AC093331.1-201ENST00000521474 169 ntBASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 AL845331.3-202ENST00000562856 261 ntBASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 AC115989.2-201ENST00000578640 563 ntBASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 AC061975.8-201ENST00000587058 721 ntBASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 AP006248.2-201ENST00000623309 592 ntBASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SHANK3Q9BYB0 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 KCTD9P5-201ENST00000504141 1170 ntBASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 AC147055.1-201ENST00000509261 750 ntBASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 OR4A45P-201ENST00000529954 901 ntBASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 AC055876.1-202ENST00000567053 138 ntBASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 AC012119.1-201ENST00000603184 222 ntBASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 AL592494.3-201ENST00000609485 464 ntBASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 MIR6845-201ENST00000613182 61 ntBASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
SHANK3Q9BYB0 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 XIAPP3-201ENST00000312918 795 ntBASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 EIF5P1-201ENST00000400019 1231 ntBASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 AC093084.1-201ENST00000424233 687 ntBASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 AC026436.1-201ENST00000510537 270 ntBASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 AC074029.1-201ENST00000552531 1044 ntBASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 AC007620.3-201ENST00000608131 497 ntBASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 AP004247.3-201ENST00000608682 624 ntBASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 Z99129.2-201ENST00000619967 314 ntBASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 CNOT6LP1-201ENST00000559681 1462 ntBASIC3.11□□□□□ -1.91
SHANK3Q9BYB0 RNU4-7P-201ENST00000364758 141 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 SNORA25.9-201ENST00000365087 128 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 FAT1P1-201ENST00000406588 507 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 NDUFS5P3-201ENST00000450668 321 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 CFTRP1-201ENST00000456646 183 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 AC091917.2-201ENST00000505002 744 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 AC021269.2-201ENST00000532318 330 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 CKS1BP1-201ENST00000555221 240 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 AC011460.1-201ENST00000636268 1834 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 AL021368.2-201ENST00000606125 5352 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 AL512646.1-201ENST00000269395 1077 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 U8.13-201ENST00000390842 128 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 AL590084.1-201ENST00000407885 387 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 RPS15AP6-201ENST00000420703 385 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 AL353729.1-201ENST00000425044 720 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 OR7L1P-201ENST00000456181 380 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 HSPE1P22-201ENST00000456856 327 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 AC068781.1-201ENST00000488231 618 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 AC106872.3-201ENST00000495104 446 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 CCNHP1-201ENST00000513311 678 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 RNA5SP281-201ENST00000516504 135 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 176.3 ms