Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 PTP4A1P1-201ENST00000420539 515 ntBASIC3.38□□□□□ -1.87
SHANK3Q9BYB0 AL356320.1-201ENST00000429616 163 ntBASIC3.38□□□□□ -1.87
SHANK3Q9BYB0 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC3.38□□□□□ -1.87
SHANK3Q9BYB0 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.38□□□□□ -1.87
SHANK3Q9BYB0 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC3.38□□□□□ -1.87
SHANK3Q9BYB0 BMS1P7-201ENST00000602440 1052 ntBASIC3.38□□□□□ -1.87
SHANK3Q9BYB0 AP003499.2-201ENST00000624100 483 ntBASIC3.38□□□□□ -1.87
SHANK3Q9BYB0 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
SHANK3Q9BYB0 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 AL034379.1-201ENST00000423216 253 ntBASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 TRBV8-1-201ENST00000481590 279 ntBASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 AC068305.1-201ENST00000497406 726 ntBASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 RANP3-201ENST00000530970 276 ntBASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 NRBF2P1-201ENST00000587407 859 ntBASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 AL020991.1-201ENST00000612314 373 ntBASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 AC010338.1-201ENST00000621823 717 ntBASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 CR381653.2-201ENST00000624041 768 ntBASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 AC009487.4-201ENST00000624969 3585 ntBASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SHANK3Q9BYB0 RNVU1-3-201ENST00000364313 161 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 SNORD114-30-201ENST00000364448 72 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 RPLP0P7-201ENST00000416050 667 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 NANOGP5-201ENST00000424456 877 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 AC106901.1-201ENST00000425086 698 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 SCARNA17.1-201ENST00000516211 143 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 SCARNA17.2-201ENST00000516334 143 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 AGGF1P8-201ENST00000562979 1000 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 AC010620.2-201ENST00000600135 313 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 SNORA35B-201ENST00000607417 129 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 TP73-AS1.1-201ENST00000611447 161 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 SCARNA17.4-201ENST00000614296 143 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 RPL21P132-201ENST00000331267 462 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 AL451074.5-201ENST00000415894 435 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 RPL23AP15-201ENST00000450202 459 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 OR6K1P-201ENST00000456766 971 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 NDUFA5P6-201ENST00000542110 379 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 AL355836.1-201ENST00000555951 870 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 AC234775.3-201ENST00000564612 656 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 VN1R79P-201ENST00000593540 513 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 AC004696.1-201ENST00000614345 607 ntBASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC3.36□□□□□ -1.87
SHANK3Q9BYB0 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 AC138915.3-201ENST00000562908 1389 ntBASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 AC125238.1-201ENST00000448842 249 ntBASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 RNU7-170P-201ENST00000459303 61 ntBASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 USP9YP5-201ENST00000511770 630 ntBASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 AC018630.1-201ENST00000541376 925 ntBASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 RFC1-217ENST00000639695 867 ntTSL 5 BASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 AC107021.2-201ENST00000567714 2095 ntBASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 AC087565.3-202ENST00000642085 1603 ntBASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 WWP1P1-201ENST00000466609 2769 ntBASIC3.35□□□□□ -1.87
SHANK3Q9BYB0 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 RAD1P1-201ENST00000231383 813 ntBASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 AC080125.1-201ENST00000414888 684 ntBASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 DPH3P2-201ENST00000422618 250 ntBASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 SNRPFP2-201ENST00000440710 251 ntBASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 HMGN1P5-201ENST00000448591 263 ntBASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 RPL30P9-201ENST00000465586 330 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 154.1 ms