Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC093909.5-201ENST00000621839 1799 ntBASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 OR4G2P-202ENST00000641004 1759 ntBASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 MIR1183-201ENST00000408856 89 ntBASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 AC127526.1-201ENST00000417526 366 ntBASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 AL590639.1-201ENST00000456484 337 ntBASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 RNA5SP282-201ENST00000516355 108 ntBASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 AP001646.1-201ENST00000527936 915 ntBASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 AL365503.1-201ENST00000605247 905 ntBASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 MIR6817-201ENST00000615588 66 ntBASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 AL355493.4-201ENST00000618530 292 ntBASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 MTND4P10-201ENST00000446199 1363 ntBASIC3.63□□□□□ -1.83
SHANK3Q9BYB0 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 SNORA81-201ENST00000408493 178 ntBASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 AC006960.1-201ENST00000419980 153 ntBASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 AL662791.1-201ENST00000441992 928 ntBASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 RNU7-157P-201ENST00000459600 66 ntBASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 AP001005.3-201ENST00000622049 129 ntBASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 DDX18P3-201ENST00000404856 2007 ntBASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 AC008725.1-201ENST00000605123 2263 ntBASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SHANK3Q9BYB0 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 Y_RNA.796-201ENST00000364268 102 ntBASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 Y_RNA.799-201ENST00000364992 102 ntBASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 MIR3074-201ENST00000384885 81 ntBASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 AL590103.1-201ENST00000434488 307 ntBASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 OR9N1P-201ENST00000491296 333 ntBASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 AC111000.5-201ENST00000506559 1178 ntBASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 RNA5SP320-201ENST00000516263 124 ntBASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 AP003122.3-201ENST00000526316 255 ntBASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 SPATA2P1-201ENST00000431223 2055 ntBASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 U3.11-201ENST00000364476 212 ntBASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 AC019155.1-201ENST00000382242 574 ntBASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 AL365396.1-201ENST00000430854 671 ntBASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 B3GNT2P1-201ENST00000434960 952 ntBASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 AC243972.3-201ENST00000539655 198 ntBASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 AL139286.1-201ENST00000604465 483 ntBASIC3.61□□□□□ -1.83
SHANK3Q9BYB0 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.6□□□□□ -1.83
SHANK3Q9BYB0 RNA5SP68-201ENST00000363885 119 ntBASIC3.6□□□□□ -1.83
SHANK3Q9BYB0 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
SHANK3Q9BYB0 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SHANK3Q9BYB0 AC073136.2-201ENST00000417282 849 ntBASIC3.6□□□□□ -1.83
SHANK3Q9BYB0 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.6□□□□□ -1.83
SHANK3Q9BYB0 RPL23AP22-201ENST00000437556 453 ntBASIC3.6□□□□□ -1.83
SHANK3Q9BYB0 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.6□□□□□ -1.83
SHANK3Q9BYB0 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.6□□□□□ -1.83
SHANK3Q9BYB0 IGKV2D-23-201ENST00000518179 286 ntBASIC3.6□□□□□ -1.83
SHANK3Q9BYB0 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SHANK3Q9BYB0 AL161912.3-201ENST00000605404 628 ntBASIC3.6□□□□□ -1.83
SHANK3Q9BYB0 RNU6-84P-201ENST00000607737 102 ntBASIC3.6□□□□□ -1.83
SHANK3Q9BYB0 AL591516.1-201ENST00000611326 274 ntBASIC3.6□□□□□ -1.83
SHANK3Q9BYB0 METTL8-218ENST00000638989 876 ntTSL 5 BASIC3.6□□□□□ -1.83
SHANK3Q9BYB0 METTL8-219ENST00000640734 726 ntTSL 2 BASIC3.6□□□□□ -1.83
SHANK3Q9BYB0 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.59□□□□□ -1.83
SHANK3Q9BYB0 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SHANK3Q9BYB0 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC3.59□□□□□ -1.83
SHANK3Q9BYB0 CACYBPP2-201ENST00000453625 678 ntBASIC3.59□□□□□ -1.83
SHANK3Q9BYB0 AC006539.3-201ENST00000454258 129 ntBASIC3.59□□□□□ -1.83
SHANK3Q9BYB0 OR5AK3P-201ENST00000527486 1297 ntBASIC3.59□□□□□ -1.83
SHANK3Q9BYB0 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC3.59□□□□□ -1.83
SHANK3Q9BYB0 AP001004.1-201ENST00000582468 324 ntBASIC3.59□□□□□ -1.83
SHANK3Q9BYB0 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
SHANK3Q9BYB0 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.84
SHANK3Q9BYB0 MIR423-201ENST00000362201 94 ntBASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 RNU6-618P-201ENST00000363518 112 ntBASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 AC078817.1-201ENST00000492623 435 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 202 ms