Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SHANK3Q9BYB0 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
SHANK3Q9BYB0 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
SHANK3Q9BYB0 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SHANK3Q9BYB0 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SHANK3Q9BYB0 BX323014.1-201ENST00000412876 237 ntBASIC4.62□□□□□ -1.67
SHANK3Q9BYB0 AP001992.1-205ENST00000462248 379 ntBASIC4.62□□□□□ -1.67
SHANK3Q9BYB0 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.62□□□□□ -1.67
SHANK3Q9BYB0 AC087276.1-201ENST00000529659 480 ntBASIC4.62□□□□□ -1.67
SHANK3Q9BYB0 MIR4769-201ENST00000584126 77 ntBASIC4.62□□□□□ -1.67
SHANK3Q9BYB0 CKS1BP3-201ENST00000600888 237 ntBASIC4.62□□□□□ -1.67
SHANK3Q9BYB0 AC128687.2-201ENST00000609657 566 ntBASIC4.62□□□□□ -1.67
SHANK3Q9BYB0 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC4.62□□□□□ -1.67
SHANK3Q9BYB0 BMS1P21-201ENST00000634565 365 ntBASIC4.62□□□□□ -1.67
SHANK3Q9BYB0 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.62□□□□□ -1.67
SHANK3Q9BYB0 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SHANK3Q9BYB0 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SHANK3Q9BYB0 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
SHANK3Q9BYB0 AC090337.1-201ENST00000579651 2074 ntBASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 U3.39-201ENST00000408569 239 ntBASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 RPL7P59-201ENST00000447700 943 ntBASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 AC022795.1-201ENST00000473808 480 ntBASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 RNA5SP341-201ENST00000516261 117 ntBASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
SHANK3Q9BYB0 RNU1-108P-201ENST00000362556 161 ntBASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 RN7SKP111-201ENST00000410349 271 ntBASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 RPF2P1-201ENST00000424137 906 ntBASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 AC098824.1-201ENST00000453565 980 ntBASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 TRBV12-2-201ENST00000489763 344 ntBASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 AL121576.1-201ENST00000556055 276 ntBASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 MIR5680-201ENST00000577577 84 ntBASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 AC067852.3-201ENST00000589177 561 ntBASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 AL606834.2-201ENST00000602954 668 ntBASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 AL353600.1-201ENST00000608148 251 ntBASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 AL162274.2-201ENST00000614406 332 ntBASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 SAGE2P-201ENST00000420011 2126 ntBASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 AC093849.1-201ENST00000563631 2209 ntBASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 OR2A20P-203ENST00000498397 1268 ntBASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 CR383656.14-201ENST00000551951 406 ntBASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
SHANK3Q9BYB0 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 U3.44-201ENST00000458938 192 ntBASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 AC138409.2-202ENST00000507274 458 ntBASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 KLKP1-201ENST00000595979 403 ntBASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 AC007998.5-201ENST00000622938 237 ntBASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
SHANK3Q9BYB0 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.68
SHANK3Q9BYB0 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.59□□□□□ -1.68
SHANK3Q9BYB0 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC4.59□□□□□ -1.68
SHANK3Q9BYB0 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.68
SHANK3Q9BYB0 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.59□□□□□ -1.68
SHANK3Q9BYB0 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.59□□□□□ -1.68
SHANK3Q9BYB0 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.58□□□□□ -1.68
SHANK3Q9BYB0 AC011266.1-201ENST00000624119 3569 ntBASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 165.8 ms