Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 AL357075.1-201ENST00000404107 726 ntBASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 AC010655.1-201ENST00000449336 292 ntBASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 BX276092.4-201ENST00000452056 248 ntBASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 COX6B1P6-201ENST00000522347 255 ntBASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 MIR5004-201ENST00000579078 107 ntBASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 AC233702.9-201ENST00000581528 203 ntBASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 AC012603.1-201ENST00000606424 528 ntBASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
SHANK3Q9BYB0 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC4.65□□□□□ -1.66
SHANK3Q9BYB0 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SHANK3Q9BYB0 MFSD8-233ENST00000641482 4860 ntBASIC4.65□□□□□ -1.66
SHANK3Q9BYB0 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.65□□□□□ -1.66
SHANK3Q9BYB0 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SHANK3Q9BYB0 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SHANK3Q9BYB0 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.65□□□□□ -1.67
SHANK3Q9BYB0 LIPT1P1-201ENST00000415870 1186 ntBASIC4.65□□□□□ -1.67
SHANK3Q9BYB0 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC4.65□□□□□ -1.67
SHANK3Q9BYB0 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.65□□□□□ -1.67
SHANK3Q9BYB0 S100A11P2-201ENST00000467589 312 ntBASIC4.65□□□□□ -1.67
SHANK3Q9BYB0 AC011825.1-201ENST00000484967 388 ntBASIC4.65□□□□□ -1.67
SHANK3Q9BYB0 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.65□□□□□ -1.67
SHANK3Q9BYB0 SETP1-201ENST00000556014 845 ntBASIC4.65□□□□□ -1.67
SHANK3Q9BYB0 AC006116.10-201ENST00000591836 581 ntBASIC4.65□□□□□ -1.67
SHANK3Q9BYB0 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.65□□□□□ -1.67
SHANK3Q9BYB0 AC091905.1-201ENST00000624400 311 ntBASIC4.65□□□□□ -1.67
SHANK3Q9BYB0 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
SHANK3Q9BYB0 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
SHANK3Q9BYB0 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
SHANK3Q9BYB0 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.67
SHANK3Q9BYB0 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 AC007685.1-201ENST00000329806 452 ntBASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 NPM1P38-201ENST00000403835 865 ntBASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 MIR1261-201ENST00000408659 82 ntBASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 ZYG11AP1-201ENST00000430329 837 ntBASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 RPS4XP2-201ENST00000458402 793 ntBASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 NCAPGP2-201ENST00000557911 754 ntBASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 RPL12P50-201ENST00000603116 116 ntBASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.64□□□□□ -1.67
SHANK3Q9BYB0 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 ARF4P3-201ENST00000397387 509 ntBASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 NDUFB1P1-201ENST00000435191 180 ntBASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 RPS15AP29-201ENST00000445539 400 ntBASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 AP006245.1-201ENST00000522549 120 ntBASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 AC019072.1-201ENST00000604535 1551 ntBASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 FRG1CP-201ENST00000358464 769 ntBASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 RNA5SP52-201ENST00000362448 134 ntBASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 AL691447.1-201ENST00000419456 387 ntBASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 ELOCP8-201ENST00000439309 332 ntBASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 ELOCP15-201ENST00000442090 332 ntBASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 PTGES3P3-201ENST00000511479 482 ntBASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 SUMO2P20-201ENST00000520803 283 ntBASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 AP005262.1-201ENST00000582646 997 ntBASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 MIR4276-201ENST00000584832 70 ntBASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 OR7A8P-201ENST00000595427 913 ntBASIC4.63□□□□□ -1.67
SHANK3Q9BYB0 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 150.9 ms