Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 AL133247.2-201ENST00000603236 482 ntBASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 RBMY2UP-201ENST00000453474 324 ntBASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 RPL21P10-201ENST00000463521 490 ntBASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 IGHV3-32-201ENST00000519182 355 ntBASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 AC103843.2-201ENST00000530523 682 ntBASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 AC006077.1-201ENST00000604746 343 ntBASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 CDY3P-201ENST00000454543 1618 ntBASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 ZNF90P1-201ENST00000480493 1951 ntBASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 OR51A6P-201ENST00000418680 1004 ntBASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 RSL24D1P3-201ENST00000449255 495 ntBASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 AC010285.3-201ENST00000511668 676 ntBASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 AC023161.2-201ENST00000551218 780 ntBASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 AC009303.3-201ENST00000591103 736 ntBASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 AC010300.1-201ENST00000600671 5134 ntBASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SHANK3Q9BYB0 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 RNA5SP50-201ENST00000363731 107 ntBASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 AC234772.1-201ENST00000377927 937 ntBASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 SNORD17-201ENST00000390930 237 ntBASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 AC017079.2-201ENST00000416102 485 ntBASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 AC010740.1-201ENST00000417035 684 ntBASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 RFPL4AP5-201ENST00000514977 504 ntBASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 AC090877.1-201ENST00000561418 344 ntBASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 AC118273.1-201ENST00000525324 3006 ntBASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.78□□□□□ -1.64
SHANK3Q9BYB0 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 RPL21P13-201ENST00000488305 481 ntBASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 BTG4P1-201ENST00000510421 183 ntBASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 Y_RNA.673-201ENST00000516306 88 ntBASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 RPL12P22-201ENST00000519073 490 ntBASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 AL365440.1-201ENST00000436135 2167 ntBASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 RNA5SP306-201ENST00000411087 107 ntBASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 BTF3P5-201ENST00000457252 467 ntBASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 162.3 ms