Protein–RNA interactions for Protein: Q8CDY9

Pcdhb7, Protocadherin beta 7, mousemouse

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhb7Q8CDY9 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Pcdhb7Q8CDY9 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
Pcdhb7Q8CDY9 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
Pcdhb7Q8CDY9 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
Pcdhb7Q8CDY9 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
Pcdhb7Q8CDY9 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC23.45■■□□□ 1.35
Pcdhb7Q8CDY9 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Pcdhb7Q8CDY9 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Pcdhb7Q8CDY9 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Pcdhb7Q8CDY9 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC23.44■■□□□ 1.34
Pcdhb7Q8CDY9 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC23.44■■□□□ 1.34
Pcdhb7Q8CDY9 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC23.44■■□□□ 1.34
Pcdhb7Q8CDY9 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC23.43■■□□□ 1.34
Pcdhb7Q8CDY9 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC23.42■■□□□ 1.34
Pcdhb7Q8CDY9 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
Pcdhb7Q8CDY9 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Pcdhb7Q8CDY9 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Pcdhb7Q8CDY9 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC23.41■■□□□ 1.34
Pcdhb7Q8CDY9 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdhb7Q8CDY9 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdhb7Q8CDY9 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC23.4■■□□□ 1.34
Pcdhb7Q8CDY9 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdhb7Q8CDY9 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC23.4■■□□□ 1.34
Pcdhb7Q8CDY9 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
Pcdhb7Q8CDY9 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC23.39■■□□□ 1.33
Pcdhb7Q8CDY9 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
Pcdhb7Q8CDY9 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.33
Pcdhb7Q8CDY9 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
Pcdhb7Q8CDY9 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Pcdhb7Q8CDY9 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Pcdhb7Q8CDY9 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Pcdhb7Q8CDY9 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC23.38■■□□□ 1.33
Pcdhb7Q8CDY9 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC23.38■■□□□ 1.33
Pcdhb7Q8CDY9 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdhb7Q8CDY9 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdhb7Q8CDY9 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdhb7Q8CDY9 Gm30023-201ENSMUST00000197970 889 ntBASIC23.36■■□□□ 1.33
Pcdhb7Q8CDY9 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC23.35■■□□□ 1.33
Pcdhb7Q8CDY9 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Pcdhb7Q8CDY9 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC23.35■■□□□ 1.33
Pcdhb7Q8CDY9 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Pcdhb7Q8CDY9 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Pcdhb7Q8CDY9 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Pcdhb7Q8CDY9 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC23.33■■□□□ 1.33
Pcdhb7Q8CDY9 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
Pcdhb7Q8CDY9 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC23.32■■□□□ 1.32
Pcdhb7Q8CDY9 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
Pcdhb7Q8CDY9 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC23.31■■□□□ 1.32
Pcdhb7Q8CDY9 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
Pcdhb7Q8CDY9 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdhb7Q8CDY9 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC23.31■■□□□ 1.32
Pcdhb7Q8CDY9 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Pcdhb7Q8CDY9 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Pcdhb7Q8CDY9 Nkain2-201ENSMUST00000092602 558 ntBASIC23.3■■□□□ 1.32
Pcdhb7Q8CDY9 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
Pcdhb7Q8CDY9 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdhb7Q8CDY9 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
Pcdhb7Q8CDY9 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdhb7Q8CDY9 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Pcdhb7Q8CDY9 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
Pcdhb7Q8CDY9 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Pcdhb7Q8CDY9 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
Pcdhb7Q8CDY9 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdhb7Q8CDY9 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC23.26■■□□□ 1.31
Pcdhb7Q8CDY9 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdhb7Q8CDY9 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
Pcdhb7Q8CDY9 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Pcdhb7Q8CDY9 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Pcdhb7Q8CDY9 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC23.25■■□□□ 1.31
Pcdhb7Q8CDY9 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC23.25■■□□□ 1.31
Pcdhb7Q8CDY9 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Pcdhb7Q8CDY9 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Pcdhb7Q8CDY9 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Pcdhb7Q8CDY9 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Pcdhb7Q8CDY9 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Pcdhb7Q8CDY9 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Pcdhb7Q8CDY9 Gm9939-201ENSMUST00000067161 1154 ntBASIC23.24■■□□□ 1.31
Pcdhb7Q8CDY9 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Pcdhb7Q8CDY9 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Pcdhb7Q8CDY9 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC23.24■■□□□ 1.31
Pcdhb7Q8CDY9 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdhb7Q8CDY9 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdhb7Q8CDY9 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC23.22■■□□□ 1.31
Pcdhb7Q8CDY9 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdhb7Q8CDY9 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
Pcdhb7Q8CDY9 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC23.22■■□□□ 1.31
Pcdhb7Q8CDY9 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdhb7Q8CDY9 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Pcdhb7Q8CDY9 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Pcdhb7Q8CDY9 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
Pcdhb7Q8CDY9 Gm42809-201ENSMUST00000198429 1138 ntBASIC23.21■■□□□ 1.31
Pcdhb7Q8CDY9 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdhb7Q8CDY9 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC23.2■■□□□ 1.3
Pcdhb7Q8CDY9 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdhb7Q8CDY9 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdhb7Q8CDY9 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdhb7Q8CDY9 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdhb7Q8CDY9 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Pcdhb7Q8CDY9 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Pcdhb7Q8CDY9 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 13.4 ms