Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.9■□□□□ 0.62
LSM1O15116 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.9■□□□□ 0.62
LSM1O15116 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.9■□□□□ 0.62
LSM1O15116 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
LSM1O15116 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.62
LSM1O15116 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
LSM1O15116 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
LSM1O15116 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
LSM1O15116 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
LSM1O15116 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.89■□□□□ 0.61
LSM1O15116 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LSM1O15116 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
LSM1O15116 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.89■□□□□ 0.61
LSM1O15116 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.89■□□□□ 0.61
LSM1O15116 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LSM1O15116 AC092437.1-201ENST00000624794 1048 ntBASIC18.89■□□□□ 0.61
LSM1O15116 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
LSM1O15116 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.89■□□□□ 0.61
LSM1O15116 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.89■□□□□ 0.61
LSM1O15116 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
LSM1O15116 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LSM1O15116 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.89■□□□□ 0.61
LSM1O15116 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
LSM1O15116 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LSM1O15116 AC120498.9-201ENST00000339021 3867 ntBASIC18.89■□□□□ 0.61
LSM1O15116 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LSM1O15116 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.89■□□□□ 0.61
LSM1O15116 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LSM1O15116 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LSM1O15116 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.89■□□□□ 0.61
LSM1O15116 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM1O15116 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM1O15116 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM1O15116 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM1O15116 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.88■□□□□ 0.61
LSM1O15116 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
LSM1O15116 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM1O15116 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.88■□□□□ 0.61
LSM1O15116 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.88■□□□□ 0.61
LSM1O15116 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.88■□□□□ 0.61
LSM1O15116 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM1O15116 AC018553.1-201ENST00000616682 1458 ntBASIC18.88■□□□□ 0.61
LSM1O15116 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM1O15116 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM1O15116 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM1O15116 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
LSM1O15116 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
LSM1O15116 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
LSM1O15116 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
LSM1O15116 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM1O15116 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.88■□□□□ 0.61
LSM1O15116 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM1O15116 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
LSM1O15116 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LSM1O15116 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
LSM1O15116 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
LSM1O15116 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
LSM1O15116 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LSM1O15116 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LSM1O15116 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
LSM1O15116 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.87■□□□□ 0.61
LSM1O15116 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
LSM1O15116 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.87■□□□□ 0.61
LSM1O15116 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LSM1O15116 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LSM1O15116 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LSM1O15116 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.87■□□□□ 0.61
LSM1O15116 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.87■□□□□ 0.61
LSM1O15116 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LSM1O15116 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LSM1O15116 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.87■□□□□ 0.61
LSM1O15116 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
LSM1O15116 AC116351.2-201ENST00000606540 1585 ntBASIC18.87■□□□□ 0.61
LSM1O15116 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LSM1O15116 AL050303.2-201ENST00000619798 666 ntBASIC18.87■□□□□ 0.61
LSM1O15116 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
LSM1O15116 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.87■□□□□ 0.61
LSM1O15116 AC073111.5-205ENST00000641717 521 ntBASIC18.87■□□□□ 0.61
LSM1O15116 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
LSM1O15116 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
LSM1O15116 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
LSM1O15116 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
LSM1O15116 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LSM1O15116 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.86■□□□□ 0.61
LSM1O15116 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LSM1O15116 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LSM1O15116 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
LSM1O15116 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LSM1O15116 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LSM1O15116 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
LSM1O15116 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.86■□□□□ 0.61
LSM1O15116 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.86■□□□□ 0.61
LSM1O15116 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.86■□□□□ 0.61
LSM1O15116 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LSM1O15116 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LSM1O15116 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
LSM1O15116 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms