Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 BUL2YML111W 2763 nt1.28□□□□□ -2.2
UBP3Q01477 tV(UAC)BtV(UAC)B 74 nt1.28□□□□□ -2.2
UBP3Q01477 tV(UAC)DtV(UAC)D 74 nt1.28□□□□□ -2.2
UBP3Q01477 SCC2YDR180W 4482 nt1.27□□□□□ -2.21 RIP-Chip
UBP3Q01477 YLR299C-AYLR299C-A 93 nt1.26□□□□□ -2.21
UBP3Q01477 SPT7YBR081C 3999 nt1.24□□□□□ -2.21
UBP3Q01477 YDL159C-BYDL159C-B 177 nt1.23□□□□□ -2.21
UBP3Q01477 YLL006W-AYLL006W-A 177 nt1.23□□□□□ -2.21
UBP3Q01477 VAM6YDL077C 3150 nt1.22□□□□□ -2.21
UBP3Q01477 snR64snR64 101 nt1.22□□□□□ -2.21
UBP3Q01477 RDS3YPR094W 324 nt1.22□□□□□ -2.21
UBP3Q01477 SIP4YJL089W 2490 nt1.22□□□□□ -2.21
UBP3Q01477 HUG1YML058W-A 207 nt1.2□□□□□ -2.22
UBP3Q01477 YPR117WYPR117W 7470 nt1.2□□□□□ -2.22
UBP3Q01477 BUD3YCL014W 4911 nt1.19□□□□□ -2.22
UBP3Q01477 NIP1YMR309C 2439 nt1.18□□□□□ -2.22
UBP3Q01477 BEM2YER155C 6504 nt1.18□□□□□ -2.22
UBP3Q01477 LTE1YAL024C 4308 nt1.18□□□□□ -2.22
UBP3Q01477 YJL077W-AYJL077W-A 87 nt1.17□□□□□ -2.22
UBP3Q01477 YNL054W-BYNL054W-B 5250 nt1.17□□□□□ -2.22
UBP3Q01477 DOP1YDR141C 5097 nt1.15□□□□□ -2.23 RIP-Chip
UBP3Q01477 YJR029WYJR029W 5268 nt1.15□□□□□ -2.23
UBP3Q01477 YPR137C-BYPR137C-B 5268 nt1.15□□□□□ -2.23
UBP3Q01477 PAU12YGR294W 363 nt1.13□□□□□ -2.23
UBP3Q01477 YKL225WYKL225W 348 nt1.12□□□□□ -2.23
UBP3Q01477 YBR109W-AYBR109W-A 225 nt1.12□□□□□ -2.23
UBP3Q01477 RKR1YMR247C 4689 nt1.12□□□□□ -2.23 RIP-Chip
UBP3Q01477 YML054C-AYML054C-A 159 nt1.11□□□□□ -2.23
UBP3Q01477 EMT1tM(CAU)D 73 nt1.09□□□□□ -2.23
UBP3Q01477 EMT5tM(CAU)J1 73 nt1.09□□□□□ -2.23
UBP3Q01477 EMT3tM(CAU)J2 73 nt1.09□□□□□ -2.23
UBP3Q01477 EMT4tM(CAU)M 73 nt1.09□□□□□ -2.23
UBP3Q01477 EMT2tM(CAU)O2 73 nt1.09□□□□□ -2.23
UBP3Q01477 YHR180C-BYHR180C-B 105 nt1.07□□□□□ -2.24
UBP3Q01477 snR38snR38 95 nt1.07□□□□□ -2.24
UBP3Q01477 AI1Q0050 2505 nt1.04□□□□□ -2.24
UBP3Q01477 YBR296C-AYBR296C-A 120 nt1.03□□□□□ -2.24
UBP3Q01477 RPL41AYDL184C 78 nt1.02□□□□□ -2.25 RIP-Chip
UBP3Q01477 YOR192C-BYOR192C-B 5313 nt1.02□□□□□ -2.25
UBP3Q01477 YER090C-AYER090C-A 90 nt1□□□□□ -2.25
UBP3Q01477 tQ(UUG)QtQ(UUG)Q 76 nt1□□□□□ -2.25
UBP3Q01477 snR50snR50 90 nt1□□□□□ -2.25
UBP3Q01477 YDR371C-AYDR371C-A 105 nt0.98□□□□□ -2.25
UBP3Q01477 PAU24YBR301W 363 nt0.98□□□□□ -2.25
UBP3Q01477 YBL100W-BYBL100W-B 5313 nt0.93□□□□□ -2.26
UBP3Q01477 IQG1YPL242C 4488 nt0.92□□□□□ -2.26
UBP3Q01477 MYO1YHR023W 5787 nt0.92□□□□□ -2.26 RIP-Chip
UBP3Q01477 PET111YMR257C 2403 nt0.9□□□□□ -2.26 RIP-Chip
UBP3Q01477 MLP1YKR095W 5628 nt0.89□□□□□ -2.27
UBP3Q01477 YDL159W-AYDL159W-A 132 nt0.87□□□□□ -2.27
UBP3Q01477 YLR149C-AYLR149C-A 87 nt0.87□□□□□ -2.27
UBP3Q01477 YPR159C-AYPR159C-A 102 nt0.86□□□□□ -2.27
UBP3Q01477 UTP20YBL004W 7482 nt0.83□□□□□ -2.28
UBP3Q01477 SKI7YOR076C 2244 nt0.83□□□□□ -2.28
UBP3Q01477 YMR160WYMR160W 2451 nt0.8□□□□□ -2.28
UBP3Q01477 snR67snR67 82 nt0.79□□□□□ -2.28
UBP3Q01477 tT(AGU)BtT(AGU)B 73 nt0.76□□□□□ -2.29
UBP3Q01477 tT(AGU)CtT(AGU)C 73 nt0.76□□□□□ -2.29
UBP3Q01477 tT(AGU)DtT(AGU)D 73 nt0.76□□□□□ -2.29
UBP3Q01477 tT(AGU)HtT(AGU)H 73 nt0.76□□□□□ -2.29
UBP3Q01477 tT(AGU)I1tT(AGU)I1 73 nt0.76□□□□□ -2.29
UBP3Q01477 tT(AGU)I2tT(AGU)I2 73 nt0.76□□□□□ -2.29
UBP3Q01477 tT(AGU)JtT(AGU)J 73 nt0.76□□□□□ -2.29
UBP3Q01477 tT(AGU)N1tT(AGU)N1 73 nt0.76□□□□□ -2.29
UBP3Q01477 tT(AGU)N2tT(AGU)N2 73 nt0.76□□□□□ -2.29
UBP3Q01477 tT(AGU)O1tT(AGU)O1 73 nt0.76□□□□□ -2.29
UBP3Q01477 tT(AGU)O2tT(AGU)O2 73 nt0.76□□□□□ -2.29
UBP3Q01477 YGR122C-AYGR122C-A 129 nt0.75□□□□□ -2.29
UBP3Q01477 YKL096C-BYKL096C-B 150 nt0.75□□□□□ -2.29
UBP3Q01477 MLP2YIL149C 5040 nt0.74□□□□□ -2.29
UBP3Q01477 YMR272W-AYMR272W-A 114 nt0.72□□□□□ -2.29
UBP3Q01477 tF(GAA)BtF(GAA)B 73 nt0.71□□□□□ -2.3
UBP3Q01477 tF(GAA)FtF(GAA)F 73 nt0.71□□□□□ -2.3
UBP3Q01477 tF(GAA)GtF(GAA)G 73 nt0.71□□□□□ -2.3
UBP3Q01477 tF(GAA)H1tF(GAA)H1 73 nt0.71□□□□□ -2.3
UBP3Q01477 tF(GAA)H2tF(GAA)H2 73 nt0.71□□□□□ -2.3
UBP3Q01477 tF(GAA)MtF(GAA)M 73 nt0.71□□□□□ -2.3
UBP3Q01477 tF(GAA)P1tF(GAA)P1 73 nt0.71□□□□□ -2.3
UBP3Q01477 tF(GAA)P2tF(GAA)P2 73 nt0.71□□□□□ -2.3
UBP3Q01477 YOR186C-AYOR186C-A 210 nt0.63□□□□□ -2.31
UBP3Q01477 UTP10YJL109C 5310 nt0.62□□□□□ -2.31
UBP3Q01477 ESP1YGR098C 4893 nt0.62□□□□□ -2.31
UBP3Q01477 YML100W-AYML100W-A 174 nt0.6□□□□□ -2.31
UBP3Q01477 SOV1YMR066W 2697 nt0.6□□□□□ -2.31
UBP3Q01477 YKL145W-AYKL145W-A 93 nt0.56□□□□□ -2.32
UBP3Q01477 YOL014WYOL014W 375 nt0.53□□□□□ -2.32
UBP3Q01477 YKL106C-AYKL106C-A 120 nt0.52□□□□□ -2.33 RIP-Chip
UBP3Q01477 FMP27YLR454W 7887 nt0.5□□□□□ -2.33
UBP3Q01477 snR75snR75 89 nt0.48□□□□□ -2.33
UBP3Q01477 YER078W-AYER078W-A 165 nt0.46□□□□□ -2.34
UBP3Q01477 tV(UAC)QtV(UAC)Q 76 nt0.44□□□□□ -2.34
UBP3Q01477 YDL114W-AYDL114W-A 114 nt0.42□□□□□ -2.34
UBP3Q01477 THO2YNL139C 4794 nt0.41□□□□□ -2.34
UBP3Q01477 YOR376W-AYOR376W-A 156 nt0.39□□□□□ -2.35
UBP3Q01477 YOL013W-AYOL013W-A 192 nt0.37□□□□□ -2.35
UBP3Q01477 YOR316C-AYOR316C-A 210 nt0.32□□□□□ -2.36
UBP3Q01477 snR128snR128 126 nt0.3□□□□□ -2.36
UBP3Q01477 snR77snR77 88 nt0.21□□□□□ -2.38
UBP3Q01477 SBH2YER019C-A 267 nt0.2□□□□□ -2.38 RIP-Chip
UBP3Q01477 YJL113WYJL113W 4647 nt0.2□□□□□ -2.38
Retrieved 100 of 7,029 protein–RNA pairs in 53.1 ms