Protein–RNA interactions for Protein: P50875

SPT20, Transcription factor SPT20, yeastyeast

Predictions only

Length 604 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SPT20P50875 tH(GUG)E1tH(GUG)E1 72 nt1.24□□□□□ -2.21
SPT20P50875 tH(GUG)E2tH(GUG)E2 72 nt1.24□□□□□ -2.21
SPT20P50875 tH(GUG)G1tH(GUG)G1 72 nt1.24□□□□□ -2.21
SPT20P50875 tH(GUG)G2tH(GUG)G2 72 nt1.24□□□□□ -2.21
SPT20P50875 tH(GUG)HtH(GUG)H 72 nt1.24□□□□□ -2.21
SPT20P50875 tH(GUG)KtH(GUG)K 72 nt1.24□□□□□ -2.21
SPT20P50875 tH(GUG)MtH(GUG)M 72 nt1.24□□□□□ -2.21
SPT20P50875 YBR109W-AYBR109W-A 225 nt1.24□□□□□ -2.21
SPT20P50875 YLL006W-AYLL006W-A 177 nt1.22□□□□□ -2.21
SPT20P50875 YML054C-AYML054C-A 159 nt1.21□□□□□ -2.22
SPT20P50875 YHR180C-BYHR180C-B 105 nt1.2□□□□□ -2.22
SPT20P50875 IML1YJR138W 4755 nt1.2□□□□□ -2.22
SPT20P50875 NIP1YMR309C 2439 nt1.2□□□□□ -2.22
SPT20P50875 YJL077W-AYJL077W-A 87 nt1.19□□□□□ -2.22
SPT20P50875 BUL2YML111W 2763 nt1.19□□□□□ -2.22
SPT20P50875 RPL41AYDL184C 78 nt1.18□□□□□ -2.22
SPT20P50875 PAU12YGR294W 363 nt1.18□□□□□ -2.22
SPT20P50875 snR38snR38 95 nt1.18□□□□□ -2.22
SPT20P50875 SIP4YJL089W 2490 nt1.17□□□□□ -2.22
SPT20P50875 YJR029WYJR029W 5268 nt1.17□□□□□ -2.22
SPT20P50875 YPR137C-BYPR137C-B 5268 nt1.17□□□□□ -2.22
SPT20P50875 AI1Q0050 2505 nt1.17□□□□□ -2.22
SPT20P50875 YNL054W-BYNL054W-B 5250 nt1.15□□□□□ -2.23
SPT20P50875 YBR296C-AYBR296C-A 120 nt1.15□□□□□ -2.23
SPT20P50875 SPT7YBR081C 3999 nt1.14□□□□□ -2.23
SPT20P50875 tV(UAC)BtV(UAC)B 74 nt1.14□□□□□ -2.23
SPT20P50875 tV(UAC)DtV(UAC)D 74 nt1.14□□□□□ -2.23
SPT20P50875 YLR149C-AYLR149C-A 87 nt1.12□□□□□ -2.23
SPT20P50875 YDL159W-AYDL159W-A 132 nt1.1□□□□□ -2.23
SPT20P50875 tQ(UUG)QtQ(UUG)Q 76 nt1.08□□□□□ -2.24
SPT20P50875 RKR1YMR247C 4689 nt1.06□□□□□ -2.24
SPT20P50875 YKL096C-BYKL096C-B 150 nt1.05□□□□□ -2.24
SPT20P50875 YPR117WYPR117W 7470 nt1.05□□□□□ -2.24
SPT20P50875 SKI7YOR076C 2244 nt1.05□□□□□ -2.24
SPT20P50875 VAM6YDL077C 3150 nt1.04□□□□□ -2.24
SPT20P50875 BUD3YCL014W 4911 nt1.04□□□□□ -2.24
SPT20P50875 YER090C-AYER090C-A 90 nt1.03□□□□□ -2.24
SPT20P50875 MYO1YHR023W 5787 nt1.02□□□□□ -2.25
SPT20P50875 YOR192C-BYOR192C-B 5313 nt1.02□□□□□ -2.25
SPT20P50875 YGR122C-AYGR122C-A 129 nt0.98□□□□□ -2.25
SPT20P50875 SCC2YDR180W 4482 nt0.98□□□□□ -2.25
SPT20P50875 EMT1tM(CAU)D 73 nt0.96□□□□□ -2.26
SPT20P50875 EMT5tM(CAU)J1 73 nt0.96□□□□□ -2.26
SPT20P50875 EMT3tM(CAU)J2 73 nt0.96□□□□□ -2.26
SPT20P50875 EMT4tM(CAU)M 73 nt0.96□□□□□ -2.26
SPT20P50875 EMT2tM(CAU)O2 73 nt0.96□□□□□ -2.26
SPT20P50875 BEM2YER155C 6504 nt0.95□□□□□ -2.26
SPT20P50875 PAU24YBR301W 363 nt0.95□□□□□ -2.26
SPT20P50875 DOP1YDR141C 5097 nt0.92□□□□□ -2.26
SPT20P50875 YER078W-AYER078W-A 165 nt0.9□□□□□ -2.27
SPT20P50875 UTP20YBL004W 7482 nt0.89□□□□□ -2.27
SPT20P50875 snR75snR75 89 nt0.88□□□□□ -2.27
SPT20P50875 PET111YMR257C 2403 nt0.87□□□□□ -2.27
SPT20P50875 LTE1YAL024C 4308 nt0.87□□□□□ -2.27
SPT20P50875 tF(GAA)BtF(GAA)B 73 nt0.87□□□□□ -2.27
SPT20P50875 tF(GAA)FtF(GAA)F 73 nt0.87□□□□□ -2.27
SPT20P50875 tF(GAA)GtF(GAA)G 73 nt0.87□□□□□ -2.27
SPT20P50875 tF(GAA)H1tF(GAA)H1 73 nt0.87□□□□□ -2.27
SPT20P50875 tF(GAA)H2tF(GAA)H2 73 nt0.87□□□□□ -2.27
SPT20P50875 tF(GAA)MtF(GAA)M 73 nt0.87□□□□□ -2.27
SPT20P50875 tF(GAA)P1tF(GAA)P1 73 nt0.87□□□□□ -2.27
SPT20P50875 tF(GAA)P2tF(GAA)P2 73 nt0.87□□□□□ -2.27
SPT20P50875 YBL100W-BYBL100W-B 5313 nt0.87□□□□□ -2.27
SPT20P50875 snR67snR67 82 nt0.86□□□□□ -2.27
SPT20P50875 YMR160WYMR160W 2451 nt0.81□□□□□ -2.28
SPT20P50875 MLP2YIL149C 5040 nt0.74□□□□□ -2.29
SPT20P50875 MLP1YKR095W 5628 nt0.72□□□□□ -2.29
SPT20P50875 YOL014WYOL014W 375 nt0.71□□□□□ -2.3
SPT20P50875 IQG1YPL242C 4488 nt0.69□□□□□ -2.3
SPT20P50875 YPR159C-AYPR159C-A 102 nt0.68□□□□□ -2.3
SPT20P50875 YKL106C-AYKL106C-A 120 nt0.67□□□□□ -2.3
SPT20P50875 tT(AGU)BtT(AGU)B 73 nt0.66□□□□□ -2.3
SPT20P50875 tT(AGU)CtT(AGU)C 73 nt0.66□□□□□ -2.3
SPT20P50875 tT(AGU)DtT(AGU)D 73 nt0.66□□□□□ -2.3
SPT20P50875 tT(AGU)HtT(AGU)H 73 nt0.66□□□□□ -2.3
SPT20P50875 tT(AGU)I1tT(AGU)I1 73 nt0.66□□□□□ -2.3
SPT20P50875 tT(AGU)I2tT(AGU)I2 73 nt0.66□□□□□ -2.3
SPT20P50875 tT(AGU)JtT(AGU)J 73 nt0.66□□□□□ -2.3
SPT20P50875 tT(AGU)N1tT(AGU)N1 73 nt0.66□□□□□ -2.3
SPT20P50875 tT(AGU)N2tT(AGU)N2 73 nt0.66□□□□□ -2.3
SPT20P50875 tT(AGU)O1tT(AGU)O1 73 nt0.66□□□□□ -2.3
SPT20P50875 tT(AGU)O2tT(AGU)O2 73 nt0.66□□□□□ -2.3
SPT20P50875 YKL145W-AYKL145W-A 93 nt0.64□□□□□ -2.31
SPT20P50875 YDL114W-AYDL114W-A 114 nt0.63□□□□□ -2.31
SPT20P50875 YMR272W-AYMR272W-A 114 nt0.63□□□□□ -2.31
SPT20P50875 tV(UAC)QtV(UAC)Q 76 nt0.61□□□□□ -2.31
SPT20P50875 YML100W-AYML100W-A 174 nt0.61□□□□□ -2.31
SPT20P50875 YOR186C-AYOR186C-A 210 nt0.61□□□□□ -2.31
SPT20P50875 UTP10YJL109C 5310 nt0.57□□□□□ -2.32
SPT20P50875 SOV1YMR066W 2697 nt0.54□□□□□ -2.32
SPT20P50875 YOR376W-AYOR376W-A 156 nt0.51□□□□□ -2.33
SPT20P50875 ESP1YGR098C 4893 nt0.51□□□□□ -2.33
SPT20P50875 FMP27YLR454W 7887 nt0.47□□□□□ -2.33
SPT20P50875 THO2YNL139C 4794 nt0.46□□□□□ -2.34
SPT20P50875 YOR316C-AYOR316C-A 210 nt0.44□□□□□ -2.34
SPT20P50875 snR77snR77 88 nt0.37□□□□□ -2.35
SPT20P50875 SBH2YER019C-A 267 nt0.35□□□□□ -2.35
SPT20P50875 snR128snR128 126 nt0.34□□□□□ -2.36
SPT20P50875 YOL013W-AYOL013W-A 192 nt0.32□□□□□ -2.36
SPT20P50875 PAU9YBL108C-A 129 nt0.3□□□□□ -2.36
Retrieved 100 of 7,029 protein–RNA pairs in 31.7 ms