Protein–RNA interactions for Protein: P40089

LSM5, U6 snRNA-associated Sm-like protein LSm5, yeast

Known RBP Predictions only

Length 93 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
LSM5	P40089	YLR342W-A	YLR342W-A	174 nt		-0.22	□□□□□ -2.44
LSM5	P40089	snR52	snR52	92 nt		-0.23	□□□□□ -2.45
LSM5	P40089	snR39B	snR39B	96 nt		-0.26	□□□□□ -2.45
LSM5	P40089	snR46	snR46	197 nt		-0.27	□□□□□ -2.45
LSM5	P40089	TFB5	YDR079C-A	219 nt		-0.29	□□□□□ -2.46
LSM5	P40089	SBH2	YER019C-A	267 nt		-0.3	□□□□□ -2.46
LSM5	P40089	YGR146C-A	YGR146C-A	162 nt		-0.31	□□□□□ -2.46
LSM5	P40089	YGR164W	YGR164W	336 nt		-0.32	□□□□□ -2.46
LSM5	P40089	YOR329W-A	YOR329W-A	210 nt		-0.32	□□□□□ -2.46
LSM5	P40089	YDR406W-A	YDR406W-A	246 nt		-0.33	□□□□□ -2.46
LSM5	P40089	tQ(UUG)Q	tQ(UUG)Q	76 nt		-0.35	□□□□□ -2.47
LSM5	P40089	snR69	snR69	101 nt		-0.39	□□□□□ -2.47
LSM5	P40089	snR48	snR48	113 nt		-0.39	□□□□□ -2.47
LSM5	P40089	YHL015W-A	YHL015W-A	84 nt		-0.43	□□□□□ -2.48
LSM5	P40089	PMP2	YEL017C-A	132 nt		-0.45	□□□□□ -2.48
LSM5	P40089	YIL071W-A	YIL071W-A	477 nt		-0.47	□□□□□ -2.48
LSM5	P40089	RDS3	YPR094W	324 nt		-0.47	□□□□□ -2.48
LSM5	P40089	YMR046W-A	YMR046W-A	129 nt		-0.49	□□□□□ -2.49
LSM5	P40089	YOR102W	YOR102W	351 nt		-0.49	□□□□□ -2.49
LSM5	P40089	YML100W-A	YML100W-A	174 nt		-0.5	□□□□□ -2.49
LSM5	P40089	YNL067W-B	YNL067W-B	141 nt		-0.51	□□□□□ -2.49
LSM5	P40089	YNL205C	YNL205C	423 nt		-0.51	□□□□□ -2.49
LSM5	P40089	YPL060C-A	YPL060C-A	3315 nt		-0.51	□□□□□ -2.49
LSM5	P40089	YDL007C-A	YDL007C-A	258 nt		-0.52	□□□□□ -2.49
LSM5	P40089	tL(UAA)Q	tL(UAA)Q	85 nt		-0.54	□□□□□ -2.5
LSM5	P40089	YER090C-A	YER090C-A	90 nt		-0.57	□□□□□ -2.5
LSM5	P40089	PAU9	YBL108C-A	129 nt		-0.57	□□□□□ -2.5
LSM5	P40089	SPG3	YDR504C	384 nt		-0.58	□□□□□ -2.5
LSM5	P40089	tD(GUC)Q	tD(GUC)Q	75 nt		-0.6	□□□□□ -2.51
LSM5	P40089	SEC10	YLR166C	2616 nt		-0.6	□□□□□ -2.51
LSM5	P40089	tM(CAU)Q1	tM(CAU)Q1	76 nt		-0.64	□□□□□ -2.51
LSM5	P40089	tA(UGC)Q	tA(UGC)Q	76 nt		-0.66	□□□□□ -2.52
LSM5	P40089	YJL150W	YJL150W	303 nt		-0.66	□□□□□ -2.52
LSM5	P40089	JLP2	YMR132C	627 nt		-0.66	□□□□□ -2.52
LSM5	P40089	snR50	snR50	90 nt		-0.66	□□□□□ -2.52
LSM5	P40089	YNL266W	YNL266W	420 nt		-0.68	□□□□□ -2.52
LSM5	P40089	YLR286W-A	YLR286W-A	135 nt		-0.69	□□□□□ -2.52
LSM5	P40089	YBR178W	YBR178W	375 nt		-0.69	□□□□□ -2.52
LSM5	P40089	YJL113W	YJL113W	4647 nt		-0.7	□□□□□ -2.52
LSM5	P40089	YNL198C	YNL198C	303 nt		-0.71	□□□□□ -2.52
LSM5	P40089	YDL159C-B	YDL159C-B	177 nt		-0.74	□□□□□ -2.53
LSM5	P40089	snR67	snR67	82 nt		-0.78	□□□□□ -2.53
LSM5	P40089	YBR196C-A	YBR196C-A	150 nt		-0.8	□□□□□ -2.54
LSM5	P40089	URB1	YKL014C	5295 nt		-0.83	□□□□□ -2.54
LSM5	P40089	SOM1	YEL059C-A	225 nt		-0.86	□□□□□ -2.55
LSM5	P40089	YLR299C-A	YLR299C-A	93 nt		-0.88	□□□□□ -2.55
LSM5	P40089	YBL053W	YBL053W	375 nt		-0.89	□□□□□ -2.55
LSM5	P40089	YCR095W-A	YCR095W-A	159 nt		-0.92	□□□□□ -2.56
LSM5	P40089	YHL009W-B	YHL009W-B	5409 nt		-0.94	□□□□□ -2.56
LSM5	P40089	snR33	snR33	183 nt		-0.95	□□□□□ -2.56
LSM5	P40089	YLR466C-B	YLR466C-B	117 nt		-0.96	□□□□□ -2.56
LSM5	P40089	YGR151C	YGR151C	336 nt		-0.97	□□□□□ -2.56
LSM5	P40089	SKI7	YOR076C	2244 nt		-1.07	□□□□□ -2.58
LSM5	P40089	snR161	snR161	161 nt		-1.11	□□□□□ -2.59
LSM5	P40089	YNL338W	YNL338W	159 nt		-1.12	□□□□□ -2.59
LSM5	P40089	YNL337W	YNL337W	255 nt		-1.14	□□□□□ -2.59
LSM5	P40089	tT(UGU)G1	tT(UGU)G1	72 nt		-1.15	□□□□□ -2.59
LSM5	P40089	tT(UGU)G2	tT(UGU)G2	72 nt		-1.15	□□□□□ -2.59
LSM5	P40089	tT(UGU)P	tT(UGU)P	72 nt		-1.15	□□□□□ -2.59
LSM5	P40089	YHR180C-B	YHR180C-B	105 nt		-1.16	□□□□□ -2.6
LSM5	P40089	YML054C-A	YML054C-A	159 nt		-1.16	□□□□□ -2.6
LSM5	P40089	YCL001W-B	YCL001W-B	255 nt		-1.26	□□□□□ -2.61
LSM5	P40089	Q0032	Q0032	291 nt		-1.29	□□□□□ -2.62
LSM5	P40089	tP(UGG)Q	tP(UGG)Q	72 nt		-1.35	□□□□□ -2.63
LSM5	P40089	YBR223W-A	YBR223W-A	120 nt		-1.39	□□□□□ -2.63
LSM5	P40089	YOL083C-A	YOL083C-A	141 nt		-1.41	□□□□□ -2.64
LSM5	P40089	YNR077C	YNR077C	255 nt		-1.44	□□□□□ -2.64
LSM5	P40089	YGL007C-A	YGL007C-A	87 nt		-1.45	□□□□□ -2.64
LSM5	P40089	RPL41A	YDL184C	78 nt		-1.48	□□□□□ -2.65
LSM5	P40089	YBR296C-A	YBR296C-A	120 nt		-1.49	□□□□□ -2.65
LSM5	P40089	YAL037C-A	YAL037C-A	93 nt		-1.51	□□□□□ -2.65
LSM5	P40089	YBL071C-B	YBL071C-B	99 nt		-1.52	□□□□□ -2.65
LSM5	P40089	YKL106C-A	YKL106C-A	120 nt		-1.55	□□□□□ -2.66
LSM5	P40089	YBL100W-C	YBL100W-C	120 nt		-1.55	□□□□□ -2.66
LSM5	P40089	YOR376W-A	YOR376W-A	156 nt		-1.55	□□□□□ -2.66
LSM5	P40089	YOL164W-A	YOL164W-A	183 nt		-1.56	□□□□□ -2.66
LSM5	P40089	YGR240C-A	YGR240C-A	201 nt		-1.57	□□□□□ -2.66
LSM5	P40089	YBR109W-A	YBR109W-A	225 nt		-1.58	□□□□□ -2.66
LSM5	P40089	snR77	snR77	88 nt		-1.6	□□□□□ -2.67
LSM5	P40089	CDC65	tQ(CUG)M	72 nt		-1.6	□□□□□ -2.67
LSM5	P40089	YOR316C-A	YOR316C-A	210 nt		-1.67	□□□□□ -2.68
LSM5	P40089	snR81	snR81	201 nt		-1.68	□□□□□ -2.68
LSM5	P40089	snR47	snR47	99 nt		-1.68	□□□□□ -2.68
LSM5	P40089	YLR294C	YLR294C	330 nt		-1.78	□□□□□ -2.69
LSM5	P40089	YMR315W-A	YMR315W-A	108 nt		-1.78	□□□□□ -2.69
LSM5	P40089	snR38	snR38	95 nt		-1.78	□□□□□ -2.69
LSM5	P40089	tY(GUA)Q	tY(GUA)Q	84 nt		-1.83	□□□□□ -2.7
LSM5	P40089	YOR225W	YOR225W	330 nt		-1.85	□□□□□ -2.71
LSM5	P40089	YGL041C-B	YGL041C-B	183 nt		-1.89	□□□□□ -2.71
LSM5	P40089	snR61	snR61	90 nt		-1.9	□□□□□ -2.71
LSM5	P40089	YNL103W-A	YNL103W-A	90 nt		-1.94	□□□□□ -2.72
LSM5	P40089	YNL170W	YNL170W	396 nt		-1.96	□□□□□ -2.72
LSM5	P40089	tS(GCU)Q1	tS(GCU)Q1	86 nt		-2.02	□□□□□ -2.73
LSM5	P40089	YKL225W	YKL225W	348 nt		-2.02	□□□□□ -2.73
LSM5	P40089	YDR034C-A	YDR034C-A	177 nt		-2.14	□□□□□ -2.75
LSM5	P40089	YOR309C	YOR309C	381 nt		-2.15	□□□□□ -2.75
LSM5	P40089	snR62	snR62	100 nt		-2.19	□□□□□ -2.76
LSM5	P40089	ATP8	Q0080	147 nt		-2.19	□□□□□ -2.76
LSM5	P40089	YDL114W-A	YDL114W-A	114 nt		-2.31	□□□□□ -2.78
LSM5	P40089	snR6	snR6	112 nt		-2.37	□□□□□ -2.79

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