Protein–RNA interactions for Protein: P38353

SSH1, Sec sixty-one protein homolog, yeastyeast

Known RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSH1P38353 tQ(UUG)QtQ(UUG)Q 76 nt-0.49□□□□□ -2.49
SSH1P38353 YML100W-AYML100W-A 174 nt-0.49□□□□□ -2.49
SSH1P38353 YOR170WYOR170W 306 nt-0.5□□□□□ -2.49
SSH1P38353 YDL007C-AYDL007C-A 258 nt-0.51□□□□□ -2.49
SSH1P38353 snR69snR69 101 nt-0.53□□□□□ -2.49
SSH1P38353 YNL067W-BYNL067W-B 141 nt-0.53□□□□□ -2.49
SSH1P38353 YOR302WYOR302W 78 nt-0.53□□□□□ -2.49
SSH1P38353 URB1YKL014C 5295 nt-0.53□□□□□ -2.49
SSH1P38353 YJL113WYJL113W 4647 nt-0.55□□□□□ -2.5
SSH1P38353 YDR524W-CYDR524W-C 90 nt-0.55□□□□□ -2.5
SSH1P38353 PAU9YBL108C-A 129 nt-0.55□□□□□ -2.5
SSH1P38353 tA(UGC)QtA(UGC)Q 76 nt-0.56□□□□□ -2.5
SSH1P38353 snR39BsnR39B 96 nt-0.56□□□□□ -2.5
SSH1P38353 YGR146C-AYGR146C-A 162 nt-0.57□□□□□ -2.5
SSH1P38353 YOR329W-AYOR329W-A 210 nt-0.57□□□□□ -2.5
SSH1P38353 YGL188C-AYGL188C-A 141 nt-0.59□□□□□ -2.5
SSH1P38353 YOR231C-AYOR231C-A 201 nt-0.6□□□□□ -2.51
SSH1P38353 PMP2YEL017C-A 132 nt-0.62□□□□□ -2.51
SSH1P38353 RDS3YPR094W 324 nt-0.62□□□□□ -2.51
SSH1P38353 YER090C-AYER090C-A 90 nt-0.63□□□□□ -2.51
SSH1P38353 snR50snR50 90 nt-0.64□□□□□ -2.51
SSH1P38353 YNL266WYNL266W 420 nt-0.66□□□□□ -2.52
SSH1P38353 snR52snR52 92 nt-0.66□□□□□ -2.52
SSH1P38353 snR80snR80 171 nt-0.68□□□□□ -2.52
SSH1P38353 YHL009W-BYHL009W-B 5409 nt-0.7□□□□□ -2.52
SSH1P38353 YLR342W-AYLR342W-A 174 nt-0.71□□□□□ -2.52
SSH1P38353 JLP2YMR132C 627 nt-0.71□□□□□ -2.52
SSH1P38353 snR48snR48 113 nt-0.71□□□□□ -2.52
SSH1P38353 tD(GUC)QtD(GUC)Q 75 nt-0.73□□□□□ -2.53
SSH1P38353 tL(UAA)QtL(UAA)Q 85 nt-0.76□□□□□ -2.53
SSH1P38353 YNL205CYNL205C 423 nt-0.76□□□□□ -2.53
SSH1P38353 tT(UGU)G1tT(UGU)G1 72 nt-0.77□□□□□ -2.53
SSH1P38353 tT(UGU)G2tT(UGU)G2 72 nt-0.77□□□□□ -2.53
SSH1P38353 tT(UGU)PtT(UGU)P 72 nt-0.77□□□□□ -2.53
SSH1P38353 YLR286W-AYLR286W-A 135 nt-0.77□□□□□ -2.53
SSH1P38353 YBR178WYBR178W 375 nt-0.77□□□□□ -2.53
SSH1P38353 snR33snR33 183 nt-0.78□□□□□ -2.53
SSH1P38353 YHL015W-AYHL015W-A 84 nt-0.8□□□□□ -2.54
SSH1P38353 snR67snR67 82 nt-0.81□□□□□ -2.54
SSH1P38353 YOR102WYOR102W 351 nt-0.81□□□□□ -2.54
SSH1P38353 YDL159C-BYDL159C-B 177 nt-0.82□□□□□ -2.54
SSH1P38353 YDR406W-AYDR406W-A 246 nt-0.88□□□□□ -2.55
SSH1P38353 SKI7YOR076C 2244 nt-0.9□□□□□ -2.55
SSH1P38353 snR161snR161 161 nt-0.91□□□□□ -2.56
SSH1P38353 YNR077CYNR077C 255 nt-0.93□□□□□ -2.56
SSH1P38353 YNL198CYNL198C 303 nt-0.95□□□□□ -2.56
SSH1P38353 YLR299C-AYLR299C-A 93 nt-0.96□□□□□ -2.56
SSH1P38353 YBR196C-AYBR196C-A 150 nt-0.96□□□□□ -2.56
SSH1P38353 YBR223W-AYBR223W-A 120 nt-0.96□□□□□ -2.56
SSH1P38353 Q0142Q0142 177 nt-0.98□□□□□ -2.57
SSH1P38353 YJL150WYJL150W 303 nt-1□□□□□ -2.57
SSH1P38353 YBL053WYBL053W 375 nt-1.03□□□□□ -2.57
SSH1P38353 YML054C-AYML054C-A 159 nt-1.08□□□□□ -2.58
SSH1P38353 SOM1YEL059C-A 225 nt-1.09□□□□□ -2.58
SSH1P38353 tP(UGG)QtP(UGG)Q 72 nt-1.1□□□□□ -2.59
SSH1P38353 YMR046W-AYMR046W-A 129 nt-1.12□□□□□ -2.59
SSH1P38353 SPG3YDR504C 384 nt-1.16□□□□□ -2.6
SSH1P38353 YHR180C-BYHR180C-B 105 nt-1.17□□□□□ -2.6
SSH1P38353 YCR095W-AYCR095W-A 159 nt-1.18□□□□□ -2.6
SSH1P38353 YOR376W-AYOR376W-A 156 nt-1.27□□□□□ -2.61
SSH1P38353 CDC65tQ(CUG)M 72 nt-1.28□□□□□ -2.61
SSH1P38353 YGR240C-AYGR240C-A 201 nt-1.28□□□□□ -2.61
SSH1P38353 snR77snR77 88 nt-1.3□□□□□ -2.62
SSH1P38353 tM(CAU)Q1tM(CAU)Q1 76 nt-1.3□□□□□ -2.62
SSH1P38353 YLR466C-BYLR466C-B 117 nt-1.36□□□□□ -2.63
SSH1P38353 YGR151CYGR151C 336 nt-1.37□□□□□ -2.63
SSH1P38353 YKL106C-AYKL106C-A 120 nt-1.39□□□□□ -2.63
SSH1P38353 YOL083C-AYOL083C-A 141 nt-1.4□□□□□ -2.63
SSH1P38353 YCL001W-BYCL001W-B 255 nt-1.41□□□□□ -2.64
SSH1P38353 RPL41AYDL184C 78 nt-1.42□□□□□ -2.64
SSH1P38353 YBR109W-AYBR109W-A 225 nt-1.42□□□□□ -2.64
SSH1P38353 YBR296C-AYBR296C-A 120 nt-1.42□□□□□ -2.64
SSH1P38353 YMR315W-AYMR315W-A 108 nt-1.43□□□□□ -2.64
SSH1P38353 YBL071C-BYBL071C-B 99 nt-1.44□□□□□ -2.64
SSH1P38353 YOR316C-AYOR316C-A 210 nt-1.44□□□□□ -2.64
SSH1P38353 YNL338WYNL338W 159 nt-1.45□□□□□ -2.64
SSH1P38353 snR81snR81 201 nt-1.48□□□□□ -2.65
SSH1P38353 tY(GUA)QtY(GUA)Q 84 nt-1.48□□□□□ -2.65
SSH1P38353 YOL164W-AYOL164W-A 183 nt-1.5□□□□□ -2.65
SSH1P38353 snR38snR38 95 nt-1.52□□□□□ -2.65
SSH1P38353 YAL037C-AYAL037C-A 93 nt-1.54□□□□□ -2.66
SSH1P38353 snR47snR47 99 nt-1.58□□□□□ -2.66
SSH1P38353 YBL100W-CYBL100W-C 120 nt-1.63□□□□□ -2.67
SSH1P38353 YNL337WYNL337W 255 nt-1.66□□□□□ -2.68
SSH1P38353 YOR309CYOR309C 381 nt-1.76□□□□□ -2.69
SSH1P38353 Q0032Q0032 291 nt-1.77□□□□□ -2.69
SSH1P38353 tS(GCU)Q1tS(GCU)Q1 86 nt-1.79□□□□□ -2.7
SSH1P38353 YKL225WYKL225W 348 nt-1.82□□□□□ -2.7
SSH1P38353 YGL007C-AYGL007C-A 87 nt-1.84□□□□□ -2.7
SSH1P38353 YGL041C-BYGL041C-B 183 nt-1.88□□□□□ -2.71
SSH1P38353 snR6snR6 112 nt-1.91□□□□□ -2.72
SSH1P38353 YNL103W-AYNL103W-A 90 nt-1.92□□□□□ -2.72
SSH1P38353 snR61snR61 90 nt-1.96□□□□□ -2.72
SSH1P38353 YDL114W-AYDL114W-A 114 nt-1.98□□□□□ -2.73
SSH1P38353 YOR335W-AYOR335W-A 81 nt-1.98□□□□□ -2.73
SSH1P38353 YDR034C-AYDR034C-A 177 nt-1.99□□□□□ -2.73
SSH1P38353 tV(UAC)QtV(UAC)Q 76 nt-2.02□□□□□ -2.73
SSH1P38353 RPL41BYDL133C-A 78 nt-2.03□□□□□ -2.73
SSH1P38353 snR73snR73 106 nt-2.06□□□□□ -2.74
SSH1P38353 YBR126W-BYBR126W-B 144 nt-2.07□□□□□ -2.74
Retrieved 100 of 7,029 protein–RNA pairs in 39.9 ms