Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Nkx3-1P97436 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Nkx3-1P97436 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC20.82■□□□□ 0.92
Nkx3-1P97436 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nkx3-1P97436 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Nkx3-1P97436 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Nkx3-1P97436 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nkx3-1P97436 Gm11175-201ENSMUST00000116172 543 ntBASIC20.8■□□□□ 0.92
Nkx3-1P97436 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Nkx3-1P97436 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC20.8■□□□□ 0.92
Nkx3-1P97436 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Nkx3-1P97436 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nkx3-1P97436 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC20.79■□□□□ 0.92
Nkx3-1P97436 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Nkx3-1P97436 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nkx3-1P97436 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Nkx3-1P97436 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC20.78■□□□□ 0.92
Nkx3-1P97436 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Nkx3-1P97436 Mir6538-201ENSMUST00000183713 110 ntBASIC20.78■□□□□ 0.92
Nkx3-1P97436 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Nkx3-1P97436 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Nkx3-1P97436 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Nkx3-1P97436 Pcf11-205ENSMUST00000208255 1720 ntBASIC20.77■□□□□ 0.92
Nkx3-1P97436 Particl-201ENSMUST00000205370 1560 ntBASIC20.75■□□□□ 0.91
Nkx3-1P97436 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Nkx3-1P97436 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Nkx3-1P97436 Gm6311-201ENSMUST00000073790 878 ntBASIC20.74■□□□□ 0.91
Nkx3-1P97436 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Nkx3-1P97436 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC20.73■□□□□ 0.91
Nkx3-1P97436 AC167019.3-201ENSMUST00000228225 1266 ntBASIC20.73■□□□□ 0.91
Nkx3-1P97436 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC20.73■□□□□ 0.91
Nkx3-1P97436 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Nkx3-1P97436 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Nkx3-1P97436 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Nkx3-1P97436 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Nkx3-1P97436 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nkx3-1P97436 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Nkx3-1P97436 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
Nkx3-1P97436 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC20.69■□□□□ 0.9
Nkx3-1P97436 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Nkx3-1P97436 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nkx3-1P97436 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nkx3-1P97436 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nkx3-1P97436 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Nkx3-1P97436 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nkx3-1P97436 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nkx3-1P97436 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nkx3-1P97436 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nkx3-1P97436 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Nkx3-1P97436 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.66■□□□□ 0.9
Nkx3-1P97436 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Nkx3-1P97436 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC20.66■□□□□ 0.9
Nkx3-1P97436 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nkx3-1P97436 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nkx3-1P97436 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nkx3-1P97436 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nkx3-1P97436 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nkx3-1P97436 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
Nkx3-1P97436 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Nkx3-1P97436 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Nkx3-1P97436 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC20.64■□□□□ 0.89
Nkx3-1P97436 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Nkx3-1P97436 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nkx3-1P97436 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nkx3-1P97436 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nkx3-1P97436 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nkx3-1P97436 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC20.62■□□□□ 0.89
Nkx3-1P97436 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Nkx3-1P97436 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC20.61■□□□□ 0.89
Nkx3-1P97436 Cap2-205ENSMUST00000225824 1634 ntBASIC20.6■□□□□ 0.89
Nkx3-1P97436 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nkx3-1P97436 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Nkx3-1P97436 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Nkx3-1P97436 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Nkx3-1P97436 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Nkx3-1P97436 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Nkx3-1P97436 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Nkx3-1P97436 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Nkx3-1P97436 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Nkx3-1P97436 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Nkx3-1P97436 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Nkx3-1P97436 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nkx3-1P97436 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Nkx3-1P97436 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Nkx3-1P97436 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Nkx3-1P97436 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Nkx3-1P97436 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nkx3-1P97436 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nkx3-1P97436 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Nkx3-1P97436 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Nkx3-1P97436 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.53■□□□□ 0.88
Nkx3-1P97436 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Nkx3-1P97436 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nkx3-1P97436 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Nkx3-1P97436 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nkx3-1P97436 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Nkx3-1P97436 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nkx3-1P97436 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nkx3-1P97436 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nkx3-1P97436 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC20.49■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 15.1 ms