Protein–RNA interactions for Protein: O70209

Pdlim3, PDZ and LIM domain protein 3, mousemouse

Known RBP Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pdlim3O70209 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Pdlim3O70209 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Pdlim3O70209 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Pdlim3O70209 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Pdlim3O70209 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Pdlim3O70209 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Pdlim3O70209 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Pdlim3O70209 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Pdlim3O70209 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Pdlim3O70209 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Pdlim3O70209 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Pdlim3O70209 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Pdlim3O70209 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Pdlim3O70209 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Pdlim3O70209 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Pdlim3O70209 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Pdlim3O70209 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Pdlim3O70209 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Pdlim3O70209 AC122428.3-201ENSMUST00000215551 2290 ntBASIC21.53■■□□□ 1.04
Pdlim3O70209 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
Pdlim3O70209 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Pdlim3O70209 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Pdlim3O70209 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Pdlim3O70209 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Pdlim3O70209 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Pdlim3O70209 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Pdlim3O70209 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Pdlim3O70209 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Pdlim3O70209 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Pdlim3O70209 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Pdlim3O70209 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Pdlim3O70209 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Pdlim3O70209 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Pdlim3O70209 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Pdlim3O70209 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.48■■□□□ 1.03
Pdlim3O70209 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Pdlim3O70209 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
Pdlim3O70209 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Pdlim3O70209 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pdlim3O70209 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pdlim3O70209 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Pdlim3O70209 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pdlim3O70209 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pdlim3O70209 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Pdlim3O70209 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Pdlim3O70209 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
Pdlim3O70209 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC21.45■■□□□ 1.02
Pdlim3O70209 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Pdlim3O70209 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Pdlim3O70209 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Pdlim3O70209 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Pdlim3O70209 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pdlim3O70209 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pdlim3O70209 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pdlim3O70209 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Pdlim3O70209 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Pdlim3O70209 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pdlim3O70209 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Pdlim3O70209 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Pdlim3O70209 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Pdlim3O70209 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Pdlim3O70209 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Pdlim3O70209 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Pdlim3O70209 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pdlim3O70209 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Pdlim3O70209 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Pdlim3O70209 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Pdlim3O70209 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC21.36■■□□□ 1.01
Pdlim3O70209 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Pdlim3O70209 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pdlim3O70209 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pdlim3O70209 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Pdlim3O70209 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pdlim3O70209 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.35■■□□□ 1.01
Pdlim3O70209 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pdlim3O70209 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pdlim3O70209 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pdlim3O70209 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
Pdlim3O70209 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Pdlim3O70209 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Pdlim3O70209 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Pdlim3O70209 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Pdlim3O70209 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Pdlim3O70209 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Pdlim3O70209 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC21.33■■□□□ 1
Pdlim3O70209 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC21.32■■□□□ 1
Pdlim3O70209 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Pdlim3O70209 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Pdlim3O70209 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC21.32■■□□□ 1
Pdlim3O70209 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC21.31■■□□□ 1
Pdlim3O70209 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC21.31■■□□□ 1
Pdlim3O70209 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Pdlim3O70209 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Pdlim3O70209 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Pdlim3O70209 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC21.29■■□□□ 1
Pdlim3O70209 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
Pdlim3O70209 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.29■■□□□ 1
Pdlim3O70209 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Pdlim3O70209 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Pdlim3O70209 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms