Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trav6-1A0A075B5Z8 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Trav6-1A0A075B5Z8 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav6-1A0A075B5Z8 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav6-1A0A075B5Z8 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav6-1A0A075B5Z8 AC122428.3-201ENSMUST00000215551 2290 ntBASIC19.2■□□□□ 0.66
Trav6-1A0A075B5Z8 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC19.2■□□□□ 0.66
Trav6-1A0A075B5Z8 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav6-1A0A075B5Z8 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav6-1A0A075B5Z8 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav6-1A0A075B5Z8 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trav6-1A0A075B5Z8 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trav6-1A0A075B5Z8 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Trav6-1A0A075B5Z8 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trav6-1A0A075B5Z8 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trav6-1A0A075B5Z8 Gm16148-201ENSMUST00000119653 893 ntBASIC19.19■□□□□ 0.66
Trav6-1A0A075B5Z8 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trav6-1A0A075B5Z8 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
Trav6-1A0A075B5Z8 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav6-1A0A075B5Z8 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav6-1A0A075B5Z8 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav6-1A0A075B5Z8 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav6-1A0A075B5Z8 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trav6-1A0A075B5Z8 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav6-1A0A075B5Z8 Gm24804-201ENSMUST00000174982 85 ntBASIC19.16■□□□□ 0.66
Trav6-1A0A075B5Z8 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav6-1A0A075B5Z8 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav6-1A0A075B5Z8 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav6-1A0A075B5Z8 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trav6-1A0A075B5Z8 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trav6-1A0A075B5Z8 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trav6-1A0A075B5Z8 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trav6-1A0A075B5Z8 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC19.13■□□□□ 0.65
Trav6-1A0A075B5Z8 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trav6-1A0A075B5Z8 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trav6-1A0A075B5Z8 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trav6-1A0A075B5Z8 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trav6-1A0A075B5Z8 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trav6-1A0A075B5Z8 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trav6-1A0A075B5Z8 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trav6-1A0A075B5Z8 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav6-1A0A075B5Z8 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Trav6-1A0A075B5Z8 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav6-1A0A075B5Z8 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC19.1■□□□□ 0.65
Trav6-1A0A075B5Z8 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Trav6-1A0A075B5Z8 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav6-1A0A075B5Z8 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav6-1A0A075B5Z8 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav6-1A0A075B5Z8 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav6-1A0A075B5Z8 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav6-1A0A075B5Z8 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trav6-1A0A075B5Z8 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trav6-1A0A075B5Z8 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Trav6-1A0A075B5Z8 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Trav6-1A0A075B5Z8 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav6-1A0A075B5Z8 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav6-1A0A075B5Z8 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav6-1A0A075B5Z8 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC19.07■□□□□ 0.64
Trav6-1A0A075B5Z8 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trav6-1A0A075B5Z8 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav6-1A0A075B5Z8 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trav6-1A0A075B5Z8 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trav6-1A0A075B5Z8 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav6-1A0A075B5Z8 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav6-1A0A075B5Z8 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav6-1A0A075B5Z8 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trav6-1A0A075B5Z8 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav6-1A0A075B5Z8 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trav6-1A0A075B5Z8 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trav6-1A0A075B5Z8 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trav6-1A0A075B5Z8 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Trav6-1A0A075B5Z8 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Trav6-1A0A075B5Z8 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trav6-1A0A075B5Z8 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Trav6-1A0A075B5Z8 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Trav6-1A0A075B5Z8 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Trav6-1A0A075B5Z8 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav6-1A0A075B5Z8 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Trav6-1A0A075B5Z8 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav6-1A0A075B5Z8 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav6-1A0A075B5Z8 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Trav6-1A0A075B5Z8 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.63
Trav6-1A0A075B5Z8 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Trav6-1A0A075B5Z8 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav6-1A0A075B5Z8 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC19.01■□□□□ 0.63
Trav6-1A0A075B5Z8 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC19■□□□□ 0.63
Trav6-1A0A075B5Z8 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trav6-1A0A075B5Z8 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trav6-1A0A075B5Z8 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trav6-1A0A075B5Z8 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trav6-1A0A075B5Z8 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Trav6-1A0A075B5Z8 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Trav6-1A0A075B5Z8 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Trav6-1A0A075B5Z8 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Trav6-1A0A075B5Z8 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Trav6-1A0A075B5Z8 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav6-1A0A075B5Z8 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav6-1A0A075B5Z8 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Trav6-1A0A075B5Z8 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trav6-1A0A075B5Z8 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms