Protein–RNA interactions for Protein: P25655

CDC39, General negative regulator of transcription subunit 1, yeastyeast

Known RBP Predictions only

Length 2,108 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC39P25655 YPL225WYPL225W 441 nt-0.17□□□□□ -2.44
CDC39P25655 snR8snR8 190 nt-0.19□□□□□ -2.44
CDC39P25655 MCM10YIL150C 1716 nt-0.19□□□□□ -2.44
CDC39P25655 SBH2YER019C-A 267 nt-0.2□□□□□ -2.44
CDC39P25655 Q0255Q0255 1419 nt-0.2□□□□□ -2.44
CDC39P25655 YJL120WYJL120W 324 nt-0.2□□□□□ -2.44
CDC39P25655 YNL319WYNL319W 441 nt-0.2□□□□□ -2.44
CDC39P25655 OST4YDL232W 111 nt-0.21□□□□□ -2.44
CDC39P25655 YML108WYML108W 318 nt-0.21□□□□□ -2.44
CDC39P25655 YHR131W-AYHR131W-A 246 nt-0.22□□□□□ -2.44
CDC39P25655 NIP1YMR309C 2439 nt-0.22□□□□□ -2.44
CDC39P25655 NUP120YKL057C 3114 nt-0.22□□□□□ -2.44
CDC39P25655 YCR022CYCR022C 345 nt-0.22□□□□□ -2.44
CDC39P25655 RPS20YHL015W 366 nt-0.22□□□□□ -2.44
CDC39P25655 YMR307C-AYMR307C-A 195 nt-0.22□□□□□ -2.44
CDC39P25655 ORC3YLL004W 1851 nt-0.22□□□□□ -2.45
CDC39P25655 YFL012WYFL012W 447 nt-0.23□□□□□ -2.45
CDC39P25655 NIP100YPL174C 2607 nt-0.23□□□□□ -2.45
CDC39P25655 TFB5YDR079C-A 219 nt-0.23□□□□□ -2.45
CDC39P25655 YDR371C-AYDR371C-A 105 nt-0.23□□□□□ -2.45
CDC39P25655 COY1YKL179C 2040 nt-0.23□□□□□ -2.45
CDC39P25655 PCF11YDR228C 1881 nt-0.24□□□□□ -2.45
CDC39P25655 YPL229WYPL229W 621 nt-0.24□□□□□ -2.45
CDC39P25655 YKL083WYKL083W 615 nt-0.25□□□□□ -2.45
CDC39P25655 snR128snR128 126 nt-0.25□□□□□ -2.45
CDC39P25655 RPS25BYLR333C 327 nt-0.26□□□□□ -2.45
CDC39P25655 YNL303WYNL303W 348 nt-0.26□□□□□ -2.45
CDC39P25655 YJL007CYJL007C 315 nt-0.26□□□□□ -2.45
CDC39P25655 CBS1YDL069C 690 nt-0.27□□□□□ -2.45
CDC39P25655 RPS26AYGL189C 360 nt-0.27□□□□□ -2.45
CDC39P25655 RPF1YHR088W 888 nt-0.27□□□□□ -2.45
CDC39P25655 YAL067W-AYAL067W-A 228 nt-0.27□□□□□ -2.45
CDC39P25655 SGF11YPL047W 300 nt-0.27□□□□□ -2.45
CDC39P25655 YLL006W-AYLL006W-A 177 nt-0.28□□□□□ -2.45
CDC39P25655 snR46snR46 197 nt-0.28□□□□□ -2.45
CDC39P25655 YDR426CYDR426C 378 nt-0.29□□□□□ -2.46
CDC39P25655 YML007C-AYML007C-A 111 nt-0.29□□□□□ -2.46
CDC39P25655 ASE1YOR058C 2658 nt-0.29□□□□□ -2.46
CDC39P25655 YEL073CYEL073C 324 nt-0.29□□□□□ -2.46
CDC39P25655 YPR092WYPR092W 306 nt-0.3□□□□□ -2.46
CDC39P25655 ZEO1YOL109W 342 nt-0.31□□□□□ -2.46
CDC39P25655 YOR192C-CYOR192C-C 237 nt-0.32□□□□□ -2.46
CDC39P25655 TAR1YLR154W-C 375 nt-0.33□□□□□ -2.46
CDC39P25655 URB1YKL014C 5295 nt-0.33□□□□□ -2.46
CDC39P25655 YER084W-AYER084W-A 513 nt-0.34□□□□□ -2.46
CDC39P25655 YER006C-AYER006C-A 318 nt-0.34□□□□□ -2.46
CDC39P25655 YLR456WYLR456W 615 nt-0.35□□□□□ -2.47
CDC39P25655 GPI15YNL038W 690 nt-0.35□□□□□ -2.47
CDC39P25655 YHR007C-AYHR007C-A 216 nt-0.36□□□□□ -2.47
CDC39P25655 YIR030W-AYIR030W-A 384 nt-0.36□□□□□ -2.47
CDC39P25655 EAF6YJR082C 342 nt-0.37□□□□□ -2.47
CDC39P25655 YBR099CYBR099C 384 nt-0.37□□□□□ -2.47
CDC39P25655 YGR174W-AYGR174W-A 87 nt-0.37□□□□□ -2.47
CDC39P25655 YLR269CYLR269C 351 nt-0.37□□□□□ -2.47
CDC39P25655 YBR072C-AYBR072C-A 162 nt-0.37□□□□□ -2.47
CDC39P25655 YDR210WYDR210W 228 nt-0.38□□□□□ -2.47
CDC39P25655 YLR041WYLR041W 321 nt-0.38□□□□□ -2.47
CDC39P25655 SOV1YMR066W 2697 nt-0.38□□□□□ -2.47
CDC39P25655 YIL071W-AYIL071W-A 477 nt-0.38□□□□□ -2.47
CDC39P25655 AIM29YKR074W 468 nt-0.39□□□□□ -2.47
CDC39P25655 SNU13YEL026W 381 nt-0.4□□□□□ -2.47
CDC39P25655 YHR130CYHR130C 336 nt-0.4□□□□□ -2.47
CDC39P25655 YHR138CYHR138C 345 nt-0.4□□□□□ -2.47
CDC39P25655 CSE2YNR010W 450 nt-0.4□□□□□ -2.47
CDC39P25655 YIL115W-AYIL115W-A 372 nt-0.41□□□□□ -2.47
CDC39P25655 PCC1YKR095W-A 267 nt-0.41□□□□□ -2.47
CDC39P25655 tN(GUU)QtN(GUU)Q 71 nt-0.41□□□□□ -2.48
CDC39P25655 BLI1YKL061W 342 nt-0.41□□□□□ -2.48
CDC39P25655 STE18YJR086W 333 nt-0.42□□□□□ -2.48
CDC39P25655 YPL205CYPL205C 345 nt-0.42□□□□□ -2.48
CDC39P25655 YPR170W-AYPR170W-A 186 nt-0.43□□□□□ -2.48
CDC39P25655 SEC10YLR166C 2616 nt-0.43□□□□□ -2.48
CDC39P25655 HAL9YOL089C 3093 nt-0.44□□□□□ -2.48
CDC39P25655 tT(UGU)G1tT(UGU)G1 72 nt-0.45□□□□□ -2.48
CDC39P25655 tT(UGU)G2tT(UGU)G2 72 nt-0.45□□□□□ -2.48
CDC39P25655 tT(UGU)PtT(UGU)P 72 nt-0.45□□□□□ -2.48
CDC39P25655 EST1YLR233C 2100 nt-0.45□□□□□ -2.48
CDC39P25655 YAR029WYAR029W 225 nt-0.46□□□□□ -2.48
CDC39P25655 YOR345CYOR345C 351 nt-0.46□□□□□ -2.48
CDC39P25655 RAD61YDR014W 1944 nt-0.46□□□□□ -2.48
CDC39P25655 YDR354C-AYDR354C-A 144 nt-0.46□□□□□ -2.48
CDC39P25655 YEL020C-BYEL020C-B 198 nt-0.47□□□□□ -2.49
CDC39P25655 YNL122CYNL122C 348 nt-0.47□□□□□ -2.49
CDC39P25655 RPS27BYHR021C 249 nt-0.48□□□□□ -2.49
CDC39P25655 snR41snR41 95 nt-0.48□□□□□ -2.49
CDC39P25655 YNR077CYNR077C 255 nt-0.49□□□□□ -2.49
CDC39P25655 YFR009W-AYFR009W-A 258 nt-0.5□□□□□ -2.49
CDC39P25655 snR33snR33 183 nt-0.5□□□□□ -2.49
CDC39P25655 TOM22YNL131W 459 nt-0.5□□□□□ -2.49
CDC39P25655 YNL067W-BYNL067W-B 141 nt-0.52□□□□□ -2.49
CDC39P25655 snR78snR78 87 nt-0.52□□□□□ -2.49
CDC39P25655 YLR282CYLR282C 342 nt-0.52□□□□□ -2.49
CDC39P25655 YKL123WYKL123W 381 nt-0.53□□□□□ -2.49
CDC39P25655 YKL100W-AYKL100W-A 90 nt-0.55□□□□□ -2.5
CDC39P25655 YGL123C-AYGL123C-A 231 nt-0.56□□□□□ -2.5
CDC39P25655 tR(UCU)Q1tR(UCU)Q1 73 nt-0.58□□□□□ -2.5
CDC39P25655 YKL063CYKL063C 504 nt-0.58□□□□□ -2.5
CDC39P25655 tA(UGC)QtA(UGC)Q 76 nt-0.59□□□□□ -2.5
CDC39P25655 BI2Q0110 1272 nt-0.59□□□□□ -2.5
CDC39P25655 SDH6YDR379C-A 240 nt-0.6□□□□□ -2.51
Retrieved 100 of 7,029 protein–RNA pairs in 56.1 ms