Protein–RNA interactions for Protein: P54000

SUB1, RNA polymerase II transcriptional coactivator SUB1, yeastyeast

Known RBP Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SUB1P54000 APL1YJR005W 2103 nt1.4□□□□□ -2.18
SUB1P54000 YJR003CYJR003C 1560 nt1.4□□□□□ -2.19
SUB1P54000 YOL160WYOL160W 342 nt1.4□□□□□ -2.19
SUB1P54000 YOR199WYOR199W 330 nt1.4□□□□□ -2.19
SUB1P54000 YBR200W-AYBR200W-A 165 nt1.4□□□□□ -2.19
SUB1P54000 RPS24BYIL069C 408 nt1.39□□□□□ -2.19
SUB1P54000 YJL135WYJL135W 318 nt1.39□□□□□ -2.19
SUB1P54000 YMR290W-AYMR290W-A 348 nt1.39□□□□□ -2.19
SUB1P54000 YPR177CYPR177C 372 nt1.39□□□□□ -2.19
SUB1P54000 YCL023CYCL023C 348 nt1.39□□□□□ -2.19
SUB1P54000 SPC98YNL126W 2541 nt1.38□□□□□ -2.19
SUB1P54000 HCH1YNL281W 462 nt1.38□□□□□ -2.19
SUB1P54000 SLD3YGL113W 2007 nt1.38□□□□□ -2.19
SUB1P54000 KAP120YPL125W 3099 nt1.38□□□□□ -2.19
SUB1P54000 STO1YMR125W 2586 nt1.38□□□□□ -2.19
SUB1P54000 YAP6YDR259C 1152 nt1.37□□□□□ -2.19
SUB1P54000 YKL063CYKL063C 504 nt1.37□□□□□ -2.19
SUB1P54000 IFH1YLR223C 3258 nt1.37□□□□□ -2.19
SUB1P54000 COG4YPR105C 2586 nt1.36□□□□□ -2.19
SUB1P54000 PRP16YKR086W 3216 nt1.36□□□□□ -2.19
SUB1P54000 FIG4YNL325C 2640 nt1.36□□□□□ -2.19
SUB1P54000 YAR047CYAR047C 321 nt1.35□□□□□ -2.19
SUB1P54000 snR51snR51 107 nt1.35□□□□□ -2.19
SUB1P54000 RPB10YOR210W 213 nt1.34□□□□□ -2.19
SUB1P54000 CDC25YLR310C 4770 nt1.34□□□□□ -2.2
SUB1P54000 EMT1tM(CAU)D 73 nt1.33□□□□□ -2.2
SUB1P54000 EMT5tM(CAU)J1 73 nt1.33□□□□□ -2.2
SUB1P54000 EMT3tM(CAU)J2 73 nt1.33□□□□□ -2.2
SUB1P54000 EMT4tM(CAU)M 73 nt1.33□□□□□ -2.2
SUB1P54000 EMT2tM(CAU)O2 73 nt1.33□□□□□ -2.2
SUB1P54000 YPL185WYPL185W 396 nt1.33□□□□□ -2.2
SUB1P54000 YKL083WYKL083W 615 nt1.32□□□□□ -2.2
SUB1P54000 YLR406C-AYLR406C-A 150 nt1.32□□□□□ -2.2
SUB1P54000 RAD34YDR314C 2079 nt1.31□□□□□ -2.2
SUB1P54000 YDL073WYDL073W 2955 nt1.31□□□□□ -2.2
SUB1P54000 RPL26AYLR344W 384 nt1.31□□□□□ -2.2
SUB1P54000 ISF1YMR081C 1017 nt1.31□□□□□ -2.2
SUB1P54000 YNL058CYNL058C 951 nt1.31□□□□□ -2.2
SUB1P54000 LAA1YJL207C 6045 nt1.31□□□□□ -2.2
SUB1P54000 IRC23YOR044W 474 nt1.3□□□□□ -2.2
SUB1P54000 YPL205CYPL205C 345 nt1.3□□□□□ -2.2
SUB1P54000 INP2YMR163C 2118 nt1.3□□□□□ -2.2
SUB1P54000 YHL042WYHL042W 453 nt1.29□□□□□ -2.2
SUB1P54000 VAM6YDL077C 3150 nt1.29□□□□□ -2.2
SUB1P54000 YDL206WYDL206W 2289 nt1.28□□□□□ -2.2
SUB1P54000 NIP100YPL174C 2607 nt1.28□□□□□ -2.2
SUB1P54000 snR72snR72 98 nt1.28□□□□□ -2.2
SUB1P54000 GPG1YGL121C 381 nt1.28□□□□□ -2.2
SUB1P54000 YGR174W-AYGR174W-A 87 nt1.28□□□□□ -2.2
SUB1P54000 YIR044CYIR044C 186 nt1.28□□□□□ -2.2
SUB1P54000 YLR202CYLR202C 327 nt1.28□□□□□ -2.2
SUB1P54000 YLR255CYLR255C 354 nt1.28□□□□□ -2.2
SUB1P54000 YNL284C-BYNL284C-B 5268 nt1.28□□□□□ -2.21
SUB1P54000 PCF11YDR228C 1881 nt1.27□□□□□ -2.21
SUB1P54000 ATG31YDR022C 591 nt1.27□□□□□ -2.21
SUB1P54000 YHL041WYHL041W 450 nt1.27□□□□□ -2.21
SUB1P54000 YAR009CYAR009C 3591 nt1.27□□□□□ -2.21
SUB1P54000 RPL33BYOR234C 324 nt1.26□□□□□ -2.21
SUB1P54000 REV3YPL167C 4515 nt1.26□□□□□ -2.21
SUB1P54000 RPS20YHL015W 366 nt1.25□□□□□ -2.21
SUB1P54000 SCC2YDR180W 4482 nt1.25□□□□□ -2.21
SUB1P54000 RPL38YLR325C 237 nt1.24□□□□□ -2.21
SUB1P54000 YBL108WYBL108W 306 nt1.24□□□□□ -2.21
SUB1P54000 YPL068CYPL068C 882 nt1.24□□□□□ -2.21
SUB1P54000 RIM20YOR275C 1986 nt1.23□□□□□ -2.21
SUB1P54000 WAR1YML076C 2835 nt1.22□□□□□ -2.21
SUB1P54000 YGR042WYGR042W 816 nt1.22□□□□□ -2.21
SUB1P54000 RPL34BYIL052C 366 nt1.22□□□□□ -2.21
SUB1P54000 YLR434CYLR434C 384 nt1.22□□□□□ -2.21
SUB1P54000 PKH2YOL100W 3246 nt1.21□□□□□ -2.22
SUB1P54000 YGR130CYGR130C 2451 nt1.21□□□□□ -2.22
SUB1P54000 YNL324WYNL324W 396 nt1.21□□□□□ -2.22
SUB1P54000 YDL196WYDL196W 330 nt1.2□□□□□ -2.22
SUB1P54000 CUL3YGR003W 2235 nt1.19□□□□□ -2.22
SUB1P54000 PAC1YOR269W 1485 nt1.18□□□□□ -2.22
SUB1P54000 ISD11YER048W-A 285 nt1.18□□□□□ -2.22
SUB1P54000 YML007C-AYML007C-A 111 nt1.18□□□□□ -2.22
SUB1P54000 PRM3YPL192C 402 nt1.18□□□□□ -2.22
SUB1P54000 tH(GUG)E1tH(GUG)E1 72 nt1.17□□□□□ -2.22
SUB1P54000 tH(GUG)E2tH(GUG)E2 72 nt1.17□□□□□ -2.22
SUB1P54000 tH(GUG)G1tH(GUG)G1 72 nt1.17□□□□□ -2.22
SUB1P54000 tH(GUG)G2tH(GUG)G2 72 nt1.17□□□□□ -2.22
SUB1P54000 tH(GUG)HtH(GUG)H 72 nt1.17□□□□□ -2.22
SUB1P54000 tH(GUG)KtH(GUG)K 72 nt1.17□□□□□ -2.22
SUB1P54000 tH(GUG)MtH(GUG)M 72 nt1.17□□□□□ -2.22
SUB1P54000 YOR032W-AYOR032W-A 201 nt1.17□□□□□ -2.22
SUB1P54000 DOP1YDR141C 5097 nt1.16□□□□□ -2.22
SUB1P54000 MSH3YCR092C 3057 nt1.16□□□□□ -2.22
SUB1P54000 BEM2YER155C 6504 nt1.15□□□□□ -2.22
SUB1P54000 NUP192YJL039C 5052 nt1.15□□□□□ -2.22
SUB1P54000 YJR029WYJR029W 5268 nt1.15□□□□□ -2.22
SUB1P54000 YPR137C-BYPR137C-B 5268 nt1.15□□□□□ -2.22
SUB1P54000 MAM33YIL070C 801 nt1.15□□□□□ -2.23
SUB1P54000 YPR002C-AYPR002C-A 198 nt1.15□□□□□ -2.23
SUB1P54000 SPT7YBR081C 3999 nt1.14□□□□□ -2.23
SUB1P54000 YDR521WYDR521W 336 nt1.13□□□□□ -2.23
SUB1P54000 YJR011CYJR011C 786 nt1.13□□□□□ -2.23
SUB1P54000 YBL008W-AYBL008W-A 240 nt1.13□□□□□ -2.23
SUB1P54000 YLL007CYLL007C 1998 nt1.11□□□□□ -2.23
SUB1P54000 AGA2YGL032C 264 nt1.11□□□□□ -2.23
Retrieved 100 of 7,029 protein–RNA pairs in 53.6 ms