Protein–RNA interactions for Protein: Q99M85

Scrt1, Transcriptional repressor scratch 1, mousemouse

Predictions only

Length 348 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scrt1Q99M85 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC21.32■■□□□ 1
Scrt1Q99M85 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC21.31■■□□□ 1
Scrt1Q99M85 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC21.31■■□□□ 1
Scrt1Q99M85 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Scrt1Q99M85 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC21.3■■□□□ 1
Scrt1Q99M85 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC21.29■■□□□ 1
Scrt1Q99M85 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Scrt1Q99M85 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC21.29■■□□□ 1
Scrt1Q99M85 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC21.29■■□□□ 1
Scrt1Q99M85 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC21.29■■□□□ 1
Scrt1Q99M85 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC21.28■■□□□ 1
Scrt1Q99M85 Gm6658-202ENSMUST00000209493 1885 ntBASIC21.28■■□□□ 1
Scrt1Q99M85 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Scrt1Q99M85 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Scrt1Q99M85 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Scrt1Q99M85 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scrt1Q99M85 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC21.25■□□□□ 0.99
Scrt1Q99M85 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
Scrt1Q99M85 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scrt1Q99M85 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scrt1Q99M85 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scrt1Q99M85 Mir6538-201ENSMUST00000183713 110 ntBASIC21.22■□□□□ 0.99
Scrt1Q99M85 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC21.22■□□□□ 0.99
Scrt1Q99M85 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Scrt1Q99M85 Cap2-205ENSMUST00000225824 1634 ntBASIC21.22■□□□□ 0.99
Scrt1Q99M85 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Scrt1Q99M85 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Scrt1Q99M85 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Scrt1Q99M85 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scrt1Q99M85 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC21.19■□□□□ 0.98
Scrt1Q99M85 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC21.19■□□□□ 0.98
Scrt1Q99M85 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scrt1Q99M85 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scrt1Q99M85 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scrt1Q99M85 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC21.17■□□□□ 0.98
Scrt1Q99M85 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scrt1Q99M85 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scrt1Q99M85 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Scrt1Q99M85 Gm30346-201ENSMUST00000218641 1699 ntBASIC21.17■□□□□ 0.98
Scrt1Q99M85 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Scrt1Q99M85 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scrt1Q99M85 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scrt1Q99M85 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Scrt1Q99M85 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scrt1Q99M85 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scrt1Q99M85 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
Scrt1Q99M85 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Scrt1Q99M85 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scrt1Q99M85 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Scrt1Q99M85 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC21.13■□□□□ 0.97
Scrt1Q99M85 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scrt1Q99M85 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Scrt1Q99M85 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Scrt1Q99M85 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Scrt1Q99M85 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC21.11■□□□□ 0.97
Scrt1Q99M85 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC21.11■□□□□ 0.97
Scrt1Q99M85 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC21.1■□□□□ 0.97
Scrt1Q99M85 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Scrt1Q99M85 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Scrt1Q99M85 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scrt1Q99M85 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Scrt1Q99M85 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scrt1Q99M85 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC21.08■□□□□ 0.96
Scrt1Q99M85 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Scrt1Q99M85 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Scrt1Q99M85 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Scrt1Q99M85 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Scrt1Q99M85 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Scrt1Q99M85 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC21.05■□□□□ 0.96
Scrt1Q99M85 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC21.04■□□□□ 0.96
Scrt1Q99M85 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC21.04■□□□□ 0.96
Scrt1Q99M85 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Scrt1Q99M85 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Scrt1Q99M85 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Scrt1Q99M85 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC21.03■□□□□ 0.96
Scrt1Q99M85 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Scrt1Q99M85 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Scrt1Q99M85 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Scrt1Q99M85 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Scrt1Q99M85 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Scrt1Q99M85 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Scrt1Q99M85 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC21■□□□□ 0.95
Scrt1Q99M85 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC21■□□□□ 0.95
Scrt1Q99M85 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC21■□□□□ 0.95
Scrt1Q99M85 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scrt1Q99M85 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Scrt1Q99M85 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scrt1Q99M85 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scrt1Q99M85 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scrt1Q99M85 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Scrt1Q99M85 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
Scrt1Q99M85 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC20.98■□□□□ 0.95
Scrt1Q99M85 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scrt1Q99M85 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scrt1Q99M85 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Scrt1Q99M85 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Scrt1Q99M85 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Scrt1Q99M85 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scrt1Q99M85 Gm6311-201ENSMUST00000073790 878 ntBASIC20.96■□□□□ 0.95
Scrt1Q99M85 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms