Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC26.16■■□□□ 1.78
Upf3aQ3ULJ3 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC26.15■■□□□ 1.78
Upf3aQ3ULJ3 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
Upf3aQ3ULJ3 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC26.14■■□□□ 1.78
Upf3aQ3ULJ3 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
Upf3aQ3ULJ3 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
Upf3aQ3ULJ3 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
Upf3aQ3ULJ3 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Upf3aQ3ULJ3 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC26.11■■□□□ 1.77
Upf3aQ3ULJ3 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC26.11■■□□□ 1.77
Upf3aQ3ULJ3 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Upf3aQ3ULJ3 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC26.11■■□□□ 1.77
Upf3aQ3ULJ3 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Upf3aQ3ULJ3 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Upf3aQ3ULJ3 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Upf3aQ3ULJ3 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC26.1■■□□□ 1.77
Upf3aQ3ULJ3 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC26.1■■□□□ 1.77
Upf3aQ3ULJ3 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Upf3aQ3ULJ3 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC26.08■■□□□ 1.77
Upf3aQ3ULJ3 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Upf3aQ3ULJ3 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC26.06■■□□□ 1.76
Upf3aQ3ULJ3 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Upf3aQ3ULJ3 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC26.05■■□□□ 1.76
Upf3aQ3ULJ3 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC26.05■■□□□ 1.76
Upf3aQ3ULJ3 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
Upf3aQ3ULJ3 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Upf3aQ3ULJ3 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Upf3aQ3ULJ3 Gm6345-201ENSMUST00000180378 1691 ntBASIC26.04■■□□□ 1.76
Upf3aQ3ULJ3 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC26.04■■□□□ 1.76
Upf3aQ3ULJ3 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
Upf3aQ3ULJ3 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Upf3aQ3ULJ3 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
Upf3aQ3ULJ3 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Upf3aQ3ULJ3 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Upf3aQ3ULJ3 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC26■■□□□ 1.75
Upf3aQ3ULJ3 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Upf3aQ3ULJ3 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Upf3aQ3ULJ3 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC25.99■■□□□ 1.75
Upf3aQ3ULJ3 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC25.99■■□□□ 1.75
Upf3aQ3ULJ3 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC25.98■■□□□ 1.75
Upf3aQ3ULJ3 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC25.98■■□□□ 1.75
Upf3aQ3ULJ3 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Upf3aQ3ULJ3 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC25.97■■□□□ 1.75
Upf3aQ3ULJ3 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC25.96■■□□□ 1.75
Upf3aQ3ULJ3 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
Upf3aQ3ULJ3 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC25.96■■□□□ 1.75
Upf3aQ3ULJ3 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC25.95■■□□□ 1.74
Upf3aQ3ULJ3 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Upf3aQ3ULJ3 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.74
Upf3aQ3ULJ3 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Upf3aQ3ULJ3 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Upf3aQ3ULJ3 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC25.94■■□□□ 1.74
Upf3aQ3ULJ3 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC25.94■■□□□ 1.74
Upf3aQ3ULJ3 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
Upf3aQ3ULJ3 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
Upf3aQ3ULJ3 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
Upf3aQ3ULJ3 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC25.89■■□□□ 1.74
Upf3aQ3ULJ3 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC25.89■■□□□ 1.74
Upf3aQ3ULJ3 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.74
Upf3aQ3ULJ3 AC131739.1-201ENSMUST00000221692 1245 ntBASIC25.88■■□□□ 1.73
Upf3aQ3ULJ3 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Upf3aQ3ULJ3 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
Upf3aQ3ULJ3 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC25.87■■□□□ 1.73
Upf3aQ3ULJ3 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC25.87■■□□□ 1.73
Upf3aQ3ULJ3 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
Upf3aQ3ULJ3 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
Upf3aQ3ULJ3 Gm11175-201ENSMUST00000116172 543 ntBASIC25.83■■□□□ 1.73
Upf3aQ3ULJ3 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Upf3aQ3ULJ3 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
Upf3aQ3ULJ3 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Upf3aQ3ULJ3 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
Upf3aQ3ULJ3 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Upf3aQ3ULJ3 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC25.81■■□□□ 1.72
Upf3aQ3ULJ3 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Upf3aQ3ULJ3 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
Upf3aQ3ULJ3 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Upf3aQ3ULJ3 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC25.79■■□□□ 1.72
Upf3aQ3ULJ3 Mir6538-201ENSMUST00000183713 110 ntBASIC25.79■■□□□ 1.72
Upf3aQ3ULJ3 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC25.79■■□□□ 1.72
Upf3aQ3ULJ3 Gm30023-201ENSMUST00000197970 889 ntBASIC25.78■■□□□ 1.72
Upf3aQ3ULJ3 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Upf3aQ3ULJ3 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Upf3aQ3ULJ3 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Upf3aQ3ULJ3 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Upf3aQ3ULJ3 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Upf3aQ3ULJ3 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Upf3aQ3ULJ3 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Upf3aQ3ULJ3 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC25.75■■□□□ 1.71
Upf3aQ3ULJ3 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
Upf3aQ3ULJ3 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Upf3aQ3ULJ3 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC25.75■■□□□ 1.71
Upf3aQ3ULJ3 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC25.75■■□□□ 1.71
Upf3aQ3ULJ3 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Upf3aQ3ULJ3 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Upf3aQ3ULJ3 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Upf3aQ3ULJ3 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC25.73■■□□□ 1.71
Upf3aQ3ULJ3 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
Upf3aQ3ULJ3 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC25.72■■□□□ 1.71
Upf3aQ3ULJ3 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Upf3aQ3ULJ3 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms