Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gm25239-201ENSMUST00000174915 86 ntBASIC41.77■■■■■ 4.28
Upf3aQ3ULJ3 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC38.69■■■■□ 3.78
Upf3aQ3ULJ3 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.14■■■■□ 3.7
Upf3aQ3ULJ3 Gm15042-201ENSMUST00000120212 883 ntBASIC36.32■■■■□ 3.4
Upf3aQ3ULJ3 Gm24109-201ENSMUST00000175489 103 ntBASIC36.28■■■■□ 3.4
Upf3aQ3ULJ3 Gm15045-201ENSMUST00000117359 883 ntBASIC35.51■■■■□ 3.28
Upf3aQ3ULJ3 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
Upf3aQ3ULJ3 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35.28■■■■□ 3.24
Upf3aQ3ULJ3 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.1■■■■□ 3.21
Upf3aQ3ULJ3 Gm23366-201ENSMUST00000175022 89 ntBASIC34.86■■■■□ 3.17
Upf3aQ3ULJ3 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
Upf3aQ3ULJ3 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
Upf3aQ3ULJ3 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC34.34■■■■□ 3.09
Upf3aQ3ULJ3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33.94■■■■□ 3.02
Upf3aQ3ULJ3 AC153911.1-202ENSMUST00000218534 1034 ntBASIC33.87■■■■□ 3.01
Upf3aQ3ULJ3 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC33.72■■■□□ 2.99
Upf3aQ3ULJ3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33.61■■■□□ 2.97
Upf3aQ3ULJ3 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.6■■■□□ 2.97
Upf3aQ3ULJ3 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC33.52■■■□□ 2.96
Upf3aQ3ULJ3 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
Upf3aQ3ULJ3 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.3■■■□□ 2.92
Upf3aQ3ULJ3 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
Upf3aQ3ULJ3 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC33.16■■■□□ 2.9
Upf3aQ3ULJ3 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
Upf3aQ3ULJ3 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
Upf3aQ3ULJ3 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
Upf3aQ3ULJ3 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
Upf3aQ3ULJ3 Gm25238-201ENSMUST00000174914 89 ntBASIC33.03■■■□□ 2.88
Upf3aQ3ULJ3 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33.02■■■□□ 2.88
Upf3aQ3ULJ3 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Upf3aQ3ULJ3 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC32.75■■■□□ 2.83
Upf3aQ3ULJ3 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC32.75■■■□□ 2.83
Upf3aQ3ULJ3 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32.58■■■□□ 2.81
Upf3aQ3ULJ3 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
Upf3aQ3ULJ3 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.39■■■□□ 2.78
Upf3aQ3ULJ3 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC32.27■■■□□ 2.76
Upf3aQ3ULJ3 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
Upf3aQ3ULJ3 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC32.11■■■□□ 2.73
Upf3aQ3ULJ3 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.1■■■□□ 2.73
Upf3aQ3ULJ3 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
Upf3aQ3ULJ3 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32.03■■■□□ 2.72
Upf3aQ3ULJ3 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32■■■□□ 2.71
Upf3aQ3ULJ3 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC31.87■■■□□ 2.69
Upf3aQ3ULJ3 Psd-208ENSMUST00000224556 2034 ntBASIC31.87■■■□□ 2.69
Upf3aQ3ULJ3 Gm27325-201ENSMUST00000175467 74 ntBASIC31.83■■■□□ 2.69
Upf3aQ3ULJ3 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.73■■■□□ 2.67
Upf3aQ3ULJ3 Gm25262-201ENSMUST00000174934 133 ntBASIC31.71■■■□□ 2.67
Upf3aQ3ULJ3 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Upf3aQ3ULJ3 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC31.48■■■□□ 2.63
Upf3aQ3ULJ3 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Upf3aQ3ULJ3 Rab21-202ENSMUST00000218831 843 ntBASIC31.35■■■□□ 2.61
Upf3aQ3ULJ3 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Upf3aQ3ULJ3 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC31.3■■■□□ 2.6
Upf3aQ3ULJ3 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.28■■■□□ 2.6
Upf3aQ3ULJ3 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC31.26■■■□□ 2.59
Upf3aQ3ULJ3 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Upf3aQ3ULJ3 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.22■■■□□ 2.59
Upf3aQ3ULJ3 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
Upf3aQ3ULJ3 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC31.11■■■□□ 2.57
Upf3aQ3ULJ3 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Upf3aQ3ULJ3 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31.1■■■□□ 2.57
Upf3aQ3ULJ3 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC31.05■■■□□ 2.56
Upf3aQ3ULJ3 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC30.99■■■□□ 2.55
Upf3aQ3ULJ3 Gm26115-201ENSMUST00000175605 87 ntBASIC30.98■■■□□ 2.55
Upf3aQ3ULJ3 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.55
Upf3aQ3ULJ3 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
Upf3aQ3ULJ3 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Upf3aQ3ULJ3 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC30.93■■■□□ 2.54
Upf3aQ3ULJ3 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC30.84■■■□□ 2.53
Upf3aQ3ULJ3 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30.83■■■□□ 2.53
Upf3aQ3ULJ3 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Upf3aQ3ULJ3 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
Upf3aQ3ULJ3 Gm8109-201ENSMUST00000194076 746 ntBASIC30.79■■■□□ 2.52
Upf3aQ3ULJ3 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30.73■■■□□ 2.51
Upf3aQ3ULJ3 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Upf3aQ3ULJ3 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Upf3aQ3ULJ3 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Upf3aQ3ULJ3 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC30.69■■■□□ 2.5
Upf3aQ3ULJ3 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Upf3aQ3ULJ3 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Upf3aQ3ULJ3 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.62■■■□□ 2.49
Upf3aQ3ULJ3 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
Upf3aQ3ULJ3 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
Upf3aQ3ULJ3 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
Upf3aQ3ULJ3 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.51■■■□□ 2.47
Upf3aQ3ULJ3 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30.45■■■□□ 2.47
Upf3aQ3ULJ3 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Upf3aQ3ULJ3 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Upf3aQ3ULJ3 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30.34■■■□□ 2.45
Upf3aQ3ULJ3 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Upf3aQ3ULJ3 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Upf3aQ3ULJ3 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC30.28■■■□□ 2.44
Upf3aQ3ULJ3 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Upf3aQ3ULJ3 Gm17082-201ENSMUST00000166043 1091 ntBASIC30.26■■■□□ 2.43
Upf3aQ3ULJ3 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC30.23■■■□□ 2.43
Upf3aQ3ULJ3 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC30.21■■■□□ 2.43
Upf3aQ3ULJ3 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Upf3aQ3ULJ3 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
Upf3aQ3ULJ3 Gm10524-201ENSMUST00000181931 1893 ntBASIC30.15■■■□□ 2.42
Upf3aQ3ULJ3 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Retrieved 100 of 76,532 protein–RNA pairs in 226.8 ms