Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
Cdc40Q9DC48 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
Cdc40Q9DC48 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC22.86■■□□□ 1.25
Cdc40Q9DC48 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
Cdc40Q9DC48 Gm6345-201ENSMUST00000180378 1691 ntBASIC22.85■■□□□ 1.25
Cdc40Q9DC48 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
Cdc40Q9DC48 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Cdc40Q9DC48 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Cdc40Q9DC48 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Cdc40Q9DC48 Gm24970-201ENSMUST00000175582 82 ntBASIC22.83■■□□□ 1.25
Cdc40Q9DC48 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Cdc40Q9DC48 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Cdc40Q9DC48 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Cdc40Q9DC48 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
Cdc40Q9DC48 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Cdc40Q9DC48 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
Cdc40Q9DC48 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Cdc40Q9DC48 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC22.77■■□□□ 1.24
Cdc40Q9DC48 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Cdc40Q9DC48 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.23
Cdc40Q9DC48 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Cdc40Q9DC48 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC22.76■■□□□ 1.23
Cdc40Q9DC48 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Cdc40Q9DC48 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Cdc40Q9DC48 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Cdc40Q9DC48 Zxda-201ENSMUST00000117281 2621 ntBASIC22.73■■□□□ 1.23
Cdc40Q9DC48 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC22.73■■□□□ 1.23
Cdc40Q9DC48 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Cdc40Q9DC48 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Cdc40Q9DC48 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC22.71■■□□□ 1.23
Cdc40Q9DC48 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC22.71■■□□□ 1.23
Cdc40Q9DC48 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Cdc40Q9DC48 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Cdc40Q9DC48 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
Cdc40Q9DC48 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
Cdc40Q9DC48 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Cdc40Q9DC48 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Cdc40Q9DC48 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Cdc40Q9DC48 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Cdc40Q9DC48 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC22.67■■□□□ 1.22
Cdc40Q9DC48 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Cdc40Q9DC48 Gm43863-201ENSMUST00000203822 1192 ntBASIC22.67■■□□□ 1.22
Cdc40Q9DC48 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Cdc40Q9DC48 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Cdc40Q9DC48 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cdc40Q9DC48 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC22.65■■□□□ 1.22
Cdc40Q9DC48 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cdc40Q9DC48 Gm9905-201ENSMUST00000065740 1845 ntBASIC22.64■■□□□ 1.22
Cdc40Q9DC48 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
Cdc40Q9DC48 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Cdc40Q9DC48 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Cdc40Q9DC48 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Cdc40Q9DC48 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Cdc40Q9DC48 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
Cdc40Q9DC48 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Cdc40Q9DC48 Gm9939-201ENSMUST00000067161 1154 ntBASIC22.58■■□□□ 1.21
Cdc40Q9DC48 Gm43445-201ENSMUST00000198564 2091 ntBASIC22.58■■□□□ 1.2
Cdc40Q9DC48 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
Cdc40Q9DC48 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Cdc40Q9DC48 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Cdc40Q9DC48 Gm6206-201ENSMUST00000133472 2199 ntBASIC22.55■■□□□ 1.2
Cdc40Q9DC48 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC22.55■■□□□ 1.2
Cdc40Q9DC48 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
Cdc40Q9DC48 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Cdc40Q9DC48 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Cdc40Q9DC48 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Cdc40Q9DC48 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Cdc40Q9DC48 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
Cdc40Q9DC48 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
Cdc40Q9DC48 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Cdc40Q9DC48 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Cdc40Q9DC48 AC157572.2-201ENSMUST00000226970 908 ntBASIC22.52■■□□□ 1.2
Cdc40Q9DC48 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Cdc40Q9DC48 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Cdc40Q9DC48 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC22.5■■□□□ 1.19
Cdc40Q9DC48 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
Cdc40Q9DC48 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Cdc40Q9DC48 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Cdc40Q9DC48 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Cdc40Q9DC48 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC22.48■■□□□ 1.19
Cdc40Q9DC48 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Cdc40Q9DC48 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Cdc40Q9DC48 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Cdc40Q9DC48 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Cdc40Q9DC48 Gm6821-201ENSMUST00000107540 542 ntBASIC22.47■■□□□ 1.19
Cdc40Q9DC48 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC22.47■■□□□ 1.19
Cdc40Q9DC48 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Cdc40Q9DC48 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Cdc40Q9DC48 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Cdc40Q9DC48 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Cdc40Q9DC48 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Cdc40Q9DC48 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
Cdc40Q9DC48 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Cdc40Q9DC48 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Cdc40Q9DC48 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC22.43■■□□□ 1.18
Cdc40Q9DC48 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Cdc40Q9DC48 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Cdc40Q9DC48 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC22.43■■□□□ 1.18
Cdc40Q9DC48 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC22.42■■□□□ 1.18
Cdc40Q9DC48 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
Retrieved 100 of 76,532 protein–RNA pairs in 46.4 ms