Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
Usp40Q8BWR4 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC35.03■■■■□ 3.2
Usp40Q8BWR4 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
Usp40Q8BWR4 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC35.02■■■■□ 3.2
Usp40Q8BWR4 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.19
Usp40Q8BWR4 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC35■■■■□ 3.19
Usp40Q8BWR4 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
Usp40Q8BWR4 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC34.99■■■■□ 3.19
Usp40Q8BWR4 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
Usp40Q8BWR4 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
Usp40Q8BWR4 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
Usp40Q8BWR4 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
Usp40Q8BWR4 Gm8503-201ENSMUST00000118131 455 ntBASIC34.95■■■■□ 3.19
Usp40Q8BWR4 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC34.95■■■■□ 3.19
Usp40Q8BWR4 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
Usp40Q8BWR4 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
Usp40Q8BWR4 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC34.92■■■■□ 3.18
Usp40Q8BWR4 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
Usp40Q8BWR4 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
Usp40Q8BWR4 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC34.9■■■■□ 3.18
Usp40Q8BWR4 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
Usp40Q8BWR4 Gm6821-201ENSMUST00000107540 542 ntBASIC34.88■■■■□ 3.17
Usp40Q8BWR4 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
Usp40Q8BWR4 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC34.87■■■■□ 3.17
Usp40Q8BWR4 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC34.86■■■■□ 3.17
Usp40Q8BWR4 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
Usp40Q8BWR4 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC34.84■■■■□ 3.17
Usp40Q8BWR4 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
Usp40Q8BWR4 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC34.83■■■■□ 3.17
Usp40Q8BWR4 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC34.83■■■■□ 3.17
Usp40Q8BWR4 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC34.83■■■■□ 3.17
Usp40Q8BWR4 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC34.82■■■■□ 3.17
Usp40Q8BWR4 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC34.81■■■■□ 3.16
Usp40Q8BWR4 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC34.81■■■■□ 3.16
Usp40Q8BWR4 Gm42809-201ENSMUST00000198429 1138 ntBASIC34.79■■■■□ 3.16
Usp40Q8BWR4 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC34.78■■■■□ 3.16
Usp40Q8BWR4 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
Usp40Q8BWR4 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC34.77■■■■□ 3.16
Usp40Q8BWR4 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.16
Usp40Q8BWR4 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.15
Usp40Q8BWR4 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC34.75■■■■□ 3.15
Usp40Q8BWR4 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
Usp40Q8BWR4 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
Usp40Q8BWR4 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC34.72■■■■□ 3.15
Usp40Q8BWR4 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC34.72■■■■□ 3.15
Usp40Q8BWR4 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
Usp40Q8BWR4 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC34.69■■■■□ 3.14
Usp40Q8BWR4 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC34.68■■■■□ 3.14
Usp40Q8BWR4 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
Usp40Q8BWR4 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC34.68■■■■□ 3.14
Usp40Q8BWR4 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
Usp40Q8BWR4 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC34.67■■■■□ 3.14
Usp40Q8BWR4 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
Usp40Q8BWR4 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC34.65■■■■□ 3.14
Usp40Q8BWR4 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC34.62■■■■□ 3.13
Usp40Q8BWR4 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC34.62■■■■□ 3.13
Usp40Q8BWR4 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC34.62■■■■□ 3.13
Usp40Q8BWR4 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC34.62■■■■□ 3.13
Usp40Q8BWR4 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC34.61■■■■□ 3.13
Usp40Q8BWR4 Gm5987-201ENSMUST00000196433 1151 ntBASIC34.61■■■■□ 3.13
Usp40Q8BWR4 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC34.61■■■■□ 3.13
Usp40Q8BWR4 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC34.59■■■■□ 3.13
Usp40Q8BWR4 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
Usp40Q8BWR4 Nkain2-201ENSMUST00000092602 558 ntBASIC34.59■■■■□ 3.13
Usp40Q8BWR4 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC34.57■■■■□ 3.13
Usp40Q8BWR4 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
Usp40Q8BWR4 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC34.56■■■■□ 3.12
Usp40Q8BWR4 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC34.56■■■■□ 3.12
Usp40Q8BWR4 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC34.55■■■■□ 3.12
Usp40Q8BWR4 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
Usp40Q8BWR4 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC34.53■■■■□ 3.12
Usp40Q8BWR4 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC34.53■■■■□ 3.12
Usp40Q8BWR4 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC34.52■■■■□ 3.12
Usp40Q8BWR4 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC34.51■■■■□ 3.12
Usp40Q8BWR4 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC34.5■■■■□ 3.11
Usp40Q8BWR4 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC34.49■■■■□ 3.11
Usp40Q8BWR4 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
Usp40Q8BWR4 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC34.49■■■■□ 3.11
Usp40Q8BWR4 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC34.48■■■■□ 3.11
Usp40Q8BWR4 Gm6345-201ENSMUST00000180378 1691 ntBASIC34.47■■■■□ 3.11
Usp40Q8BWR4 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC34.47■■■■□ 3.11
Usp40Q8BWR4 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC34.46■■■■□ 3.11
Usp40Q8BWR4 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
Usp40Q8BWR4 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.1
Usp40Q8BWR4 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC34.42■■■■□ 3.1
Usp40Q8BWR4 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
Usp40Q8BWR4 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
Usp40Q8BWR4 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC34.38■■■■□ 3.09
Usp40Q8BWR4 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC34.37■■■■□ 3.09
Usp40Q8BWR4 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC34.36■■■■□ 3.09
Usp40Q8BWR4 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC34.35■■■■□ 3.09
Usp40Q8BWR4 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
Usp40Q8BWR4 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
Usp40Q8BWR4 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC34.33■■■■□ 3.09
Usp40Q8BWR4 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC34.32■■■■□ 3.09
Usp40Q8BWR4 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC34.31■■■■□ 3.08
Usp40Q8BWR4 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC34.31■■■■□ 3.08
Usp40Q8BWR4 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
Usp40Q8BWR4 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC34.3■■■■□ 3.08
Usp40Q8BWR4 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC34.3■■■■□ 3.08
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms