Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC29.31■■■□□ 2.28
Ddx55Q6ZPL9 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
Ddx55Q6ZPL9 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Ddx55Q6ZPL9 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC29.3■■■□□ 2.28
Ddx55Q6ZPL9 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC29.29■■■□□ 2.28
Ddx55Q6ZPL9 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC29.29■■■□□ 2.28
Ddx55Q6ZPL9 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
Ddx55Q6ZPL9 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
Ddx55Q6ZPL9 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC29.28■■■□□ 2.28
Ddx55Q6ZPL9 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
Ddx55Q6ZPL9 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.27
Ddx55Q6ZPL9 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
Ddx55Q6ZPL9 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
Ddx55Q6ZPL9 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
Ddx55Q6ZPL9 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
Ddx55Q6ZPL9 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
Ddx55Q6ZPL9 Gm30346-201ENSMUST00000218641 1699 ntBASIC29.21■■■□□ 2.27
Ddx55Q6ZPL9 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
Ddx55Q6ZPL9 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC29.21■■■□□ 2.27
Ddx55Q6ZPL9 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC29.21■■■□□ 2.27
Ddx55Q6ZPL9 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
Ddx55Q6ZPL9 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC29.21■■■□□ 2.27
Ddx55Q6ZPL9 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
Ddx55Q6ZPL9 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
Ddx55Q6ZPL9 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC29.19■■■□□ 2.26
Ddx55Q6ZPL9 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC29.19■■■□□ 2.26
Ddx55Q6ZPL9 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
Ddx55Q6ZPL9 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
Ddx55Q6ZPL9 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
Ddx55Q6ZPL9 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
Ddx55Q6ZPL9 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
Ddx55Q6ZPL9 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC29.15■■■□□ 2.26
Ddx55Q6ZPL9 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
Ddx55Q6ZPL9 Gm7432-201ENSMUST00000210343 879 ntBASIC29.13■■■□□ 2.25
Ddx55Q6ZPL9 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Ddx55Q6ZPL9 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Ddx55Q6ZPL9 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
Ddx55Q6ZPL9 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
Ddx55Q6ZPL9 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
Ddx55Q6ZPL9 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
Ddx55Q6ZPL9 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
Ddx55Q6ZPL9 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC29.08■■■□□ 2.25
Ddx55Q6ZPL9 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
Ddx55Q6ZPL9 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC29.05■■■□□ 2.24
Ddx55Q6ZPL9 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
Ddx55Q6ZPL9 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
Ddx55Q6ZPL9 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC29.01■■■□□ 2.23
Ddx55Q6ZPL9 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC29.01■■■□□ 2.23
Ddx55Q6ZPL9 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC29■■■□□ 2.23
Ddx55Q6ZPL9 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC28.99■■■□□ 2.23
Ddx55Q6ZPL9 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC28.99■■■□□ 2.23
Ddx55Q6ZPL9 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Ddx55Q6ZPL9 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
Ddx55Q6ZPL9 Gm2415-204ENSMUST00000190235 2004 ntBASIC28.98■■■□□ 2.23
Ddx55Q6ZPL9 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
Ddx55Q6ZPL9 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC28.97■■■□□ 2.23
Ddx55Q6ZPL9 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
Ddx55Q6ZPL9 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
Ddx55Q6ZPL9 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC28.95■■■□□ 2.22
Ddx55Q6ZPL9 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
Ddx55Q6ZPL9 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC28.94■■■□□ 2.22
Ddx55Q6ZPL9 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
Ddx55Q6ZPL9 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC28.93■■■□□ 2.22
Ddx55Q6ZPL9 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC28.92■■■□□ 2.22
Ddx55Q6ZPL9 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC28.92■■■□□ 2.22
Ddx55Q6ZPL9 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
Ddx55Q6ZPL9 Gm11599-201ENSMUST00000118720 878 ntBASIC28.91■■■□□ 2.22
Ddx55Q6ZPL9 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC28.91■■■□□ 2.22
Ddx55Q6ZPL9 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC28.9■■■□□ 2.22
Ddx55Q6ZPL9 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC28.9■■■□□ 2.22
Ddx55Q6ZPL9 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC28.89■■■□□ 2.21
Ddx55Q6ZPL9 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
Ddx55Q6ZPL9 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC28.86■■■□□ 2.21
Ddx55Q6ZPL9 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC28.86■■■□□ 2.21
Ddx55Q6ZPL9 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC28.84■■■□□ 2.21
Ddx55Q6ZPL9 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC28.84■■■□□ 2.21
Ddx55Q6ZPL9 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Ddx55Q6ZPL9 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Ddx55Q6ZPL9 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
Ddx55Q6ZPL9 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
Ddx55Q6ZPL9 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
Ddx55Q6ZPL9 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC28.78■■■□□ 2.2
Ddx55Q6ZPL9 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
Ddx55Q6ZPL9 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC28.76■■■□□ 2.19
Ddx55Q6ZPL9 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
Ddx55Q6ZPL9 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC28.75■■■□□ 2.19
Ddx55Q6ZPL9 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC28.74■■■□□ 2.19
Ddx55Q6ZPL9 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Ddx55Q6ZPL9 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
Ddx55Q6ZPL9 Gm6658-202ENSMUST00000209493 1885 ntBASIC28.73■■■□□ 2.19
Ddx55Q6ZPL9 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC28.73■■■□□ 2.19
Ddx55Q6ZPL9 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
Ddx55Q6ZPL9 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
Ddx55Q6ZPL9 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC28.71■■■□□ 2.19
Ddx55Q6ZPL9 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC28.71■■■□□ 2.19
Ddx55Q6ZPL9 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC28.7■■■□□ 2.18
Ddx55Q6ZPL9 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC28.7■■■□□ 2.18
Ddx55Q6ZPL9 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC28.69■■■□□ 2.18
Ddx55Q6ZPL9 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC28.69■■■□□ 2.18
Ddx55Q6ZPL9 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Retrieved 100 of 76,532 protein–RNA pairs in 58 ms