Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Ddx58Q6Q899 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC31.34■■■□□ 2.61
Ddx58Q6Q899 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Ddx58Q6Q899 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Ddx58Q6Q899 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
Ddx58Q6Q899 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Ddx58Q6Q899 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Ddx58Q6Q899 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Ddx58Q6Q899 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
Ddx58Q6Q899 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
Ddx58Q6Q899 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Ddx58Q6Q899 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC31.27■■■□□ 2.6
Ddx58Q6Q899 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
Ddx58Q6Q899 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Ddx58Q6Q899 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Ddx58Q6Q899 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC31.25■■■□□ 2.59
Ddx58Q6Q899 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC31.23■■■□□ 2.59
Ddx58Q6Q899 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC31.23■■■□□ 2.59
Ddx58Q6Q899 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Ddx58Q6Q899 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Ddx58Q6Q899 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Ddx58Q6Q899 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Ddx58Q6Q899 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.59
Ddx58Q6Q899 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC31.2■■■□□ 2.59
Ddx58Q6Q899 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
Ddx58Q6Q899 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
Ddx58Q6Q899 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC31.18■■■□□ 2.58
Ddx58Q6Q899 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
Ddx58Q6Q899 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC31.17■■■□□ 2.58
Ddx58Q6Q899 Gm9939-201ENSMUST00000067161 1154 ntBASIC31.17■■■□□ 2.58
Ddx58Q6Q899 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
Ddx58Q6Q899 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC31.16■■■□□ 2.58
Ddx58Q6Q899 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
Ddx58Q6Q899 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
Ddx58Q6Q899 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC31.15■■■□□ 2.58
Ddx58Q6Q899 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Ddx58Q6Q899 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Ddx58Q6Q899 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
Ddx58Q6Q899 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC31.11■■■□□ 2.57
Ddx58Q6Q899 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Ddx58Q6Q899 Gm6345-201ENSMUST00000180378 1691 ntBASIC31.09■■■□□ 2.57
Ddx58Q6Q899 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Ddx58Q6Q899 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Ddx58Q6Q899 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC31.07■■■□□ 2.56
Ddx58Q6Q899 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC31.07■■■□□ 2.56
Ddx58Q6Q899 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
Ddx58Q6Q899 Gm8503-201ENSMUST00000118131 455 ntBASIC31.03■■■□□ 2.56
Ddx58Q6Q899 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Ddx58Q6Q899 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC31.02■■■□□ 2.56
Ddx58Q6Q899 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Ddx58Q6Q899 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC31.01■■■□□ 2.56
Ddx58Q6Q899 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC31■■■□□ 2.55
Ddx58Q6Q899 Gm6821-201ENSMUST00000107540 542 ntBASIC30.99■■■□□ 2.55
Ddx58Q6Q899 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC30.99■■■□□ 2.55
Ddx58Q6Q899 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC30.98■■■□□ 2.55
Ddx58Q6Q899 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
Ddx58Q6Q899 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
Ddx58Q6Q899 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Ddx58Q6Q899 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
Ddx58Q6Q899 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Ddx58Q6Q899 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Ddx58Q6Q899 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
Ddx58Q6Q899 Gm42809-201ENSMUST00000198429 1138 ntBASIC30.92■■■□□ 2.54
Ddx58Q6Q899 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
Ddx58Q6Q899 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
Ddx58Q6Q899 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
Ddx58Q6Q899 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.54
Ddx58Q6Q899 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC30.89■■■□□ 2.54
Ddx58Q6Q899 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC30.89■■■□□ 2.54
Ddx58Q6Q899 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
Ddx58Q6Q899 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC30.88■■■□□ 2.53
Ddx58Q6Q899 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Ddx58Q6Q899 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
Ddx58Q6Q899 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC30.87■■■□□ 2.53
Ddx58Q6Q899 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC30.87■■■□□ 2.53
Ddx58Q6Q899 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
Ddx58Q6Q899 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Ddx58Q6Q899 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC30.85■■■□□ 2.53
Ddx58Q6Q899 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Ddx58Q6Q899 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC30.82■■■□□ 2.52
Ddx58Q6Q899 Nkain2-201ENSMUST00000092602 558 ntBASIC30.82■■■□□ 2.52
Ddx58Q6Q899 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
Ddx58Q6Q899 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Ddx58Q6Q899 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Ddx58Q6Q899 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC30.79■■■□□ 2.52
Ddx58Q6Q899 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC30.79■■■□□ 2.52
Ddx58Q6Q899 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC30.78■■■□□ 2.52
Ddx58Q6Q899 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
Ddx58Q6Q899 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC30.77■■■□□ 2.52
Ddx58Q6Q899 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC30.76■■■□□ 2.52
Ddx58Q6Q899 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Ddx58Q6Q899 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
Ddx58Q6Q899 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC30.75■■■□□ 2.51
Ddx58Q6Q899 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
Ddx58Q6Q899 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Ddx58Q6Q899 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
Ddx58Q6Q899 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC30.73■■■□□ 2.51
Ddx58Q6Q899 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Ddx58Q6Q899 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Ddx58Q6Q899 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms