Protein–RNA interactions for Protein: Q61572

Foxc1, Forkhead box protein C1, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Foxc1Q61572 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
Foxc1Q61572 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
Foxc1Q61572 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Foxc1Q61572 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Foxc1Q61572 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Foxc1Q61572 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Foxc1Q61572 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Foxc1Q61572 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Foxc1Q61572 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Foxc1Q61572 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
Foxc1Q61572 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Foxc1Q61572 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Foxc1Q61572 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Foxc1Q61572 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Foxc1Q61572 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Foxc1Q61572 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Foxc1Q61572 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Foxc1Q61572 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Foxc1Q61572 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Foxc1Q61572 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Foxc1Q61572 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Foxc1Q61572 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Foxc1Q61572 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Foxc1Q61572 Gm24970-201ENSMUST00000175582 82 ntBASIC17.79■□□□□ 0.44
Foxc1Q61572 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC17.79■□□□□ 0.44
Foxc1Q61572 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Foxc1Q61572 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Foxc1Q61572 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC17.79■□□□□ 0.44
Foxc1Q61572 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC17.78■□□□□ 0.44
Foxc1Q61572 AC153504.1-201ENSMUST00000218379 2290 ntBASIC17.78■□□□□ 0.44
Foxc1Q61572 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC17.77■□□□□ 0.44
Foxc1Q61572 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Foxc1Q61572 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Foxc1Q61572 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Foxc1Q61572 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Foxc1Q61572 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Foxc1Q61572 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC17.76■□□□□ 0.43
Foxc1Q61572 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Foxc1Q61572 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Foxc1Q61572 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Foxc1Q61572 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC17.75■□□□□ 0.43
Foxc1Q61572 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Foxc1Q61572 Gm6345-201ENSMUST00000180378 1691 ntBASIC17.74■□□□□ 0.43
Foxc1Q61572 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Foxc1Q61572 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Foxc1Q61572 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Foxc1Q61572 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Foxc1Q61572 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC17.74■□□□□ 0.43
Foxc1Q61572 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Foxc1Q61572 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Foxc1Q61572 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Foxc1Q61572 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Foxc1Q61572 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Foxc1Q61572 Gm43863-201ENSMUST00000203822 1192 ntBASIC17.71■□□□□ 0.43
Foxc1Q61572 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Foxc1Q61572 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Foxc1Q61572 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
Foxc1Q61572 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Foxc1Q61572 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Foxc1Q61572 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Foxc1Q61572 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Foxc1Q61572 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Foxc1Q61572 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Foxc1Q61572 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Foxc1Q61572 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Foxc1Q61572 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC17.69■□□□□ 0.42
Foxc1Q61572 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Foxc1Q61572 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Foxc1Q61572 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Foxc1Q61572 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Foxc1Q61572 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Foxc1Q61572 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC17.64■□□□□ 0.41
Foxc1Q61572 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
Foxc1Q61572 AC157572.2-201ENSMUST00000226970 908 ntBASIC17.64■□□□□ 0.41
Foxc1Q61572 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Foxc1Q61572 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Foxc1Q61572 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC17.63■□□□□ 0.41
Foxc1Q61572 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Foxc1Q61572 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Foxc1Q61572 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Foxc1Q61572 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Foxc1Q61572 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Foxc1Q61572 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC17.6■□□□□ 0.41
Foxc1Q61572 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Foxc1Q61572 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Foxc1Q61572 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Foxc1Q61572 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Foxc1Q61572 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Foxc1Q61572 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Foxc1Q61572 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Foxc1Q61572 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Foxc1Q61572 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
Foxc1Q61572 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Foxc1Q61572 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Foxc1Q61572 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Foxc1Q61572 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Foxc1Q61572 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Foxc1Q61572 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC17.57■□□□□ 0.4
Foxc1Q61572 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Foxc1Q61572 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms