Protein–RNA interactions for Protein: P41233

Abca1, ATP-binding cassette sub-family A member 1, mousemouse

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Abca1P41233 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Abca1P41233 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Abca1P41233 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC20.46■□□□□ 0.87
Abca1P41233 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC20.46■□□□□ 0.87
Abca1P41233 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
Abca1P41233 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Abca1P41233 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Abca1P41233 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Abca1P41233 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC20.44■□□□□ 0.86
Abca1P41233 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Abca1P41233 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC20.44■□□□□ 0.86
Abca1P41233 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Abca1P41233 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Abca1P41233 Gm2415-204ENSMUST00000190235 2004 ntBASIC20.43■□□□□ 0.86
Abca1P41233 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Abca1P41233 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC20.42■□□□□ 0.86
Abca1P41233 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Abca1P41233 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Abca1P41233 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC20.41■□□□□ 0.86
Abca1P41233 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC20.41■□□□□ 0.86
Abca1P41233 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Abca1P41233 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Abca1P41233 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC20.39■□□□□ 0.86
Abca1P41233 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Abca1P41233 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Abca1P41233 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Abca1P41233 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Abca1P41233 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Abca1P41233 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Abca1P41233 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Abca1P41233 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Abca1P41233 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC20.36■□□□□ 0.85
Abca1P41233 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Abca1P41233 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Abca1P41233 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC20.35■□□□□ 0.85
Abca1P41233 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Abca1P41233 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Abca1P41233 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Abca1P41233 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Abca1P41233 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Abca1P41233 Gm11599-201ENSMUST00000118720 878 ntBASIC20.33■□□□□ 0.85
Abca1P41233 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Abca1P41233 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Abca1P41233 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Abca1P41233 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Abca1P41233 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Abca1P41233 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC20.3■□□□□ 0.84
Abca1P41233 Gm30346-201ENSMUST00000218641 1699 ntBASIC20.3■□□□□ 0.84
Abca1P41233 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Abca1P41233 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Abca1P41233 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
Abca1P41233 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Abca1P41233 Nkain2-201ENSMUST00000092602 558 ntBASIC20.28■□□□□ 0.84
Abca1P41233 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Abca1P41233 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC20.27■□□□□ 0.84
Abca1P41233 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC20.27■□□□□ 0.84
Abca1P41233 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Abca1P41233 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Abca1P41233 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC20.26■□□□□ 0.83
Abca1P41233 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
Abca1P41233 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Abca1P41233 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Abca1P41233 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Abca1P41233 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Abca1P41233 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Abca1P41233 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC20.24■□□□□ 0.83
Abca1P41233 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Abca1P41233 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Abca1P41233 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
Abca1P41233 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Abca1P41233 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Abca1P41233 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Abca1P41233 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Abca1P41233 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Abca1P41233 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Abca1P41233 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Abca1P41233 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Abca1P41233 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Abca1P41233 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Abca1P41233 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC20.17■□□□□ 0.82
Abca1P41233 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Abca1P41233 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC20.17■□□□□ 0.82
Abca1P41233 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Abca1P41233 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Abca1P41233 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Abca1P41233 Gm11175-201ENSMUST00000116172 543 ntBASIC20.16■□□□□ 0.82
Abca1P41233 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Abca1P41233 Mir6538-201ENSMUST00000183713 110 ntBASIC20.15■□□□□ 0.82
Abca1P41233 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Abca1P41233 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Abca1P41233 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Abca1P41233 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC20.13■□□□□ 0.81
Abca1P41233 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Abca1P41233 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Abca1P41233 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Abca1P41233 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Abca1P41233 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Abca1P41233 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Abca1P41233 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC20.1■□□□□ 0.81
Abca1P41233 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms