Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trbv1A0A0B4J1G7 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trbv1A0A0B4J1G7 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trbv1A0A0B4J1G7 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trbv1A0A0B4J1G7 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trbv1A0A0B4J1G7 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trbv1A0A0B4J1G7 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trbv1A0A0B4J1G7 Gm6345-201ENSMUST00000180378 1691 ntBASIC19.16■□□□□ 0.66
Trbv1A0A0B4J1G7 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trbv1A0A0B4J1G7 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Trbv1A0A0B4J1G7 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC19.14■□□□□ 0.65
Trbv1A0A0B4J1G7 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trbv1A0A0B4J1G7 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Trbv1A0A0B4J1G7 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC19.13■□□□□ 0.65
Trbv1A0A0B4J1G7 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trbv1A0A0B4J1G7 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trbv1A0A0B4J1G7 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trbv1A0A0B4J1G7 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trbv1A0A0B4J1G7 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trbv1A0A0B4J1G7 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trbv1A0A0B4J1G7 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trbv1A0A0B4J1G7 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trbv1A0A0B4J1G7 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trbv1A0A0B4J1G7 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trbv1A0A0B4J1G7 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trbv1A0A0B4J1G7 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Trbv1A0A0B4J1G7 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trbv1A0A0B4J1G7 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trbv1A0A0B4J1G7 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trbv1A0A0B4J1G7 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trbv1A0A0B4J1G7 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trbv1A0A0B4J1G7 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Trbv1A0A0B4J1G7 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trbv1A0A0B4J1G7 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trbv1A0A0B4J1G7 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trbv1A0A0B4J1G7 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trbv1A0A0B4J1G7 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Trbv1A0A0B4J1G7 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
Trbv1A0A0B4J1G7 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Trbv1A0A0B4J1G7 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trbv1A0A0B4J1G7 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Trbv1A0A0B4J1G7 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC19.01■□□□□ 0.63
Trbv1A0A0B4J1G7 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC19.01■□□□□ 0.63
Trbv1A0A0B4J1G7 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trbv1A0A0B4J1G7 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trbv1A0A0B4J1G7 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Trbv1A0A0B4J1G7 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trbv1A0A0B4J1G7 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trbv1A0A0B4J1G7 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trbv1A0A0B4J1G7 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Trbv1A0A0B4J1G7 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trbv1A0A0B4J1G7 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC18.99■□□□□ 0.63
Trbv1A0A0B4J1G7 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trbv1A0A0B4J1G7 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trbv1A0A0B4J1G7 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Trbv1A0A0B4J1G7 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Trbv1A0A0B4J1G7 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trbv1A0A0B4J1G7 Gm24804-201ENSMUST00000174982 85 ntBASIC18.96■□□□□ 0.63
Trbv1A0A0B4J1G7 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC18.96■□□□□ 0.63
Trbv1A0A0B4J1G7 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trbv1A0A0B4J1G7 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trbv1A0A0B4J1G7 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trbv1A0A0B4J1G7 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Trbv1A0A0B4J1G7 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trbv1A0A0B4J1G7 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trbv1A0A0B4J1G7 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trbv1A0A0B4J1G7 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trbv1A0A0B4J1G7 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trbv1A0A0B4J1G7 Peli2-204ENSMUST00000226513 1320 ntBASIC18.92■□□□□ 0.62
Trbv1A0A0B4J1G7 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trbv1A0A0B4J1G7 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trbv1A0A0B4J1G7 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Trbv1A0A0B4J1G7 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trbv1A0A0B4J1G7 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trbv1A0A0B4J1G7 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trbv1A0A0B4J1G7 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trbv1A0A0B4J1G7 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trbv1A0A0B4J1G7 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Trbv1A0A0B4J1G7 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trbv1A0A0B4J1G7 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Trbv1A0A0B4J1G7 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trbv1A0A0B4J1G7 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Trbv1A0A0B4J1G7 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trbv1A0A0B4J1G7 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trbv1A0A0B4J1G7 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
Trbv1A0A0B4J1G7 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trbv1A0A0B4J1G7 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Trbv1A0A0B4J1G7 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trbv1A0A0B4J1G7 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trbv1A0A0B4J1G7 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trbv1A0A0B4J1G7 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trbv1A0A0B4J1G7 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trbv1A0A0B4J1G7 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trbv1A0A0B4J1G7 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC18.85■□□□□ 0.61
Trbv1A0A0B4J1G7 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trbv1A0A0B4J1G7 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC18.83■□□□□ 0.6
Trbv1A0A0B4J1G7 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trbv1A0A0B4J1G7 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Trbv1A0A0B4J1G7 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trbv1A0A0B4J1G7 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 13.1 ms