Protein–RNA interactions for Protein: A0A075B633

Trav8n-2, T cell receptor alpha variable 8n-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8n-2A0A075B633 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC23.28■■□□□ 1.32
Trav8n-2A0A075B633 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC23.27■■□□□ 1.32
Trav8n-2A0A075B633 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Trav8n-2A0A075B633 Nkain2-201ENSMUST00000092602 558 ntBASIC23.26■■□□□ 1.31
Trav8n-2A0A075B633 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
Trav8n-2A0A075B633 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Trav8n-2A0A075B633 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Trav8n-2A0A075B633 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Trav8n-2A0A075B633 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC23.23■■□□□ 1.31
Trav8n-2A0A075B633 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trav8n-2A0A075B633 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Trav8n-2A0A075B633 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trav8n-2A0A075B633 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trav8n-2A0A075B633 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
Trav8n-2A0A075B633 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC23.19■■□□□ 1.3
Trav8n-2A0A075B633 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trav8n-2A0A075B633 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC23.18■■□□□ 1.3
Trav8n-2A0A075B633 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
Trav8n-2A0A075B633 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Trav8n-2A0A075B633 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trav8n-2A0A075B633 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Trav8n-2A0A075B633 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Trav8n-2A0A075B633 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Trav8n-2A0A075B633 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Trav8n-2A0A075B633 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trav8n-2A0A075B633 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trav8n-2A0A075B633 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trav8n-2A0A075B633 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Trav8n-2A0A075B633 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Trav8n-2A0A075B633 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC23.13■■□□□ 1.29
Trav8n-2A0A075B633 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Trav8n-2A0A075B633 Gm30346-201ENSMUST00000218641 1699 ntBASIC23.13■■□□□ 1.29
Trav8n-2A0A075B633 Gm7432-201ENSMUST00000210343 879 ntBASIC23.12■■□□□ 1.29
Trav8n-2A0A075B633 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC23.12■■□□□ 1.29
Trav8n-2A0A075B633 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Trav8n-2A0A075B633 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trav8n-2A0A075B633 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC23.11■■□□□ 1.29
Trav8n-2A0A075B633 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Trav8n-2A0A075B633 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Trav8n-2A0A075B633 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
Trav8n-2A0A075B633 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Trav8n-2A0A075B633 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Trav8n-2A0A075B633 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC23.06■■□□□ 1.28
Trav8n-2A0A075B633 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Trav8n-2A0A075B633 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Trav8n-2A0A075B633 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
Trav8n-2A0A075B633 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Trav8n-2A0A075B633 Gm2415-204ENSMUST00000190235 2004 ntBASIC23.03■■□□□ 1.28
Trav8n-2A0A075B633 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Trav8n-2A0A075B633 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC23■■□□□ 1.27
Trav8n-2A0A075B633 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC23■■□□□ 1.27
Trav8n-2A0A075B633 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC23■■□□□ 1.27
Trav8n-2A0A075B633 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
Trav8n-2A0A075B633 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Trav8n-2A0A075B633 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Trav8n-2A0A075B633 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Trav8n-2A0A075B633 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Trav8n-2A0A075B633 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC22.97■■□□□ 1.27
Trav8n-2A0A075B633 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC22.97■■□□□ 1.27
Trav8n-2A0A075B633 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC22.96■■□□□ 1.27
Trav8n-2A0A075B633 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC22.96■■□□□ 1.27
Trav8n-2A0A075B633 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Trav8n-2A0A075B633 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Trav8n-2A0A075B633 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Trav8n-2A0A075B633 Gm11599-201ENSMUST00000118720 878 ntBASIC22.94■■□□□ 1.26
Trav8n-2A0A075B633 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Trav8n-2A0A075B633 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
Trav8n-2A0A075B633 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Trav8n-2A0A075B633 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Trav8n-2A0A075B633 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Trav8n-2A0A075B633 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC22.91■■□□□ 1.26
Trav8n-2A0A075B633 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
Trav8n-2A0A075B633 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
Trav8n-2A0A075B633 Gm6658-202ENSMUST00000209493 1885 ntBASIC22.89■■□□□ 1.25
Trav8n-2A0A075B633 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Trav8n-2A0A075B633 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Trav8n-2A0A075B633 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Trav8n-2A0A075B633 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC22.87■■□□□ 1.25
Trav8n-2A0A075B633 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC22.86■■□□□ 1.25
Trav8n-2A0A075B633 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC22.86■■□□□ 1.25
Trav8n-2A0A075B633 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Trav8n-2A0A075B633 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
Trav8n-2A0A075B633 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trav8n-2A0A075B633 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC22.83■■□□□ 1.25
Trav8n-2A0A075B633 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Trav8n-2A0A075B633 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC22.8■■□□□ 1.24
Trav8n-2A0A075B633 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC22.79■■□□□ 1.24
Trav8n-2A0A075B633 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Trav8n-2A0A075B633 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Trav8n-2A0A075B633 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Trav8n-2A0A075B633 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC22.77■■□□□ 1.24
Trav8n-2A0A075B633 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC22.77■■□□□ 1.24
Trav8n-2A0A075B633 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Trav8n-2A0A075B633 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC22.76■■□□□ 1.23
Trav8n-2A0A075B633 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC22.76■■□□□ 1.23
Trav8n-2A0A075B633 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Trav8n-2A0A075B633 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Trav8n-2A0A075B633 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Trav8n-2A0A075B633 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC22.75■■□□□ 1.23
Trav8n-2A0A075B633 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
Retrieved 100 of 76,532 protein–RNA pairs in 16.3 ms