Protein–RNA interactions for Protein: A0A075B633

Trav8n-2, T cell receptor alpha variable 8n-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8n-2A0A075B633 Gm25239-201ENSMUST00000174915 86 ntBASIC36.41■■■■□ 3.42
Trav8n-2A0A075B633 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC33.76■■■□□ 2.99
Trav8n-2A0A075B633 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
Trav8n-2A0A075B633 Gm15042-201ENSMUST00000120212 883 ntBASIC31.65■■■□□ 2.66
Trav8n-2A0A075B633 Gm24109-201ENSMUST00000175489 103 ntBASIC31.64■■■□□ 2.66
Trav8n-2A0A075B633 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Trav8n-2A0A075B633 Gm15045-201ENSMUST00000117359 883 ntBASIC30.84■■■□□ 2.53
Trav8n-2A0A075B633 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
Trav8n-2A0A075B633 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC30.76■■■□□ 2.51
Trav8n-2A0A075B633 Gm23366-201ENSMUST00000175022 89 ntBASIC30.45■■■□□ 2.47
Trav8n-2A0A075B633 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Trav8n-2A0A075B633 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
Trav8n-2A0A075B633 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
Trav8n-2A0A075B633 AC153911.1-202ENSMUST00000218534 1034 ntBASIC29.57■■■□□ 2.32
Trav8n-2A0A075B633 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Trav8n-2A0A075B633 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC29.34■■■□□ 2.29
Trav8n-2A0A075B633 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC29.29■■■□□ 2.28
Trav8n-2A0A075B633 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC29.29■■■□□ 2.28
Trav8n-2A0A075B633 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
Trav8n-2A0A075B633 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
Trav8n-2A0A075B633 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC29.01■■■□□ 2.23
Trav8n-2A0A075B633 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC28.91■■■□□ 2.22
Trav8n-2A0A075B633 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
Trav8n-2A0A075B633 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
Trav8n-2A0A075B633 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC28.89■■■□□ 2.22
Trav8n-2A0A075B633 Gm25238-201ENSMUST00000174914 89 ntBASIC28.77■■■□□ 2.2
Trav8n-2A0A075B633 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC28.68■■■□□ 2.18
Trav8n-2A0A075B633 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Trav8n-2A0A075B633 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Trav8n-2A0A075B633 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Trav8n-2A0A075B633 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC28.38■■■□□ 2.13
Trav8n-2A0A075B633 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC28.3■■■□□ 2.12
Trav8n-2A0A075B633 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
Trav8n-2A0A075B633 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC28.16■■■□□ 2.1
Trav8n-2A0A075B633 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
Trav8n-2A0A075B633 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Trav8n-2A0A075B633 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC28■■■□□ 2.07
Trav8n-2A0A075B633 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC27.99■■■□□ 2.07
Trav8n-2A0A075B633 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
Trav8n-2A0A075B633 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC27.94■■■□□ 2.06
Trav8n-2A0A075B633 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC27.8■■■□□ 2.04
Trav8n-2A0A075B633 Gm25262-201ENSMUST00000174934 133 ntBASIC27.77■■■□□ 2.04
Trav8n-2A0A075B633 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC27.74■■■□□ 2.03
Trav8n-2A0A075B633 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC27.72■■■□□ 2.03
Trav8n-2A0A075B633 Gm27325-201ENSMUST00000175467 74 ntBASIC27.68■■■□□ 2.02
Trav8n-2A0A075B633 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC27.57■■■□□ 2
Trav8n-2A0A075B633 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Trav8n-2A0A075B633 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Trav8n-2A0A075B633 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC27.36■■□□□ 1.97
Trav8n-2A0A075B633 Rab21-202ENSMUST00000218831 843 ntBASIC27.36■■□□□ 1.97
Trav8n-2A0A075B633 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC27.31■■□□□ 1.96
Trav8n-2A0A075B633 Psd-208ENSMUST00000224556 2034 ntBASIC27.29■■□□□ 1.96
Trav8n-2A0A075B633 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Trav8n-2A0A075B633 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC27.27■■□□□ 1.96
Trav8n-2A0A075B633 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
Trav8n-2A0A075B633 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Trav8n-2A0A075B633 Gm26115-201ENSMUST00000175605 87 ntBASIC27.16■■□□□ 1.94
Trav8n-2A0A075B633 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC27.15■■□□□ 1.94
Trav8n-2A0A075B633 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC27.12■■□□□ 1.93
Trav8n-2A0A075B633 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC27.09■■□□□ 1.93
Trav8n-2A0A075B633 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Trav8n-2A0A075B633 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
Trav8n-2A0A075B633 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
Trav8n-2A0A075B633 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC26.98■■□□□ 1.91
Trav8n-2A0A075B633 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Trav8n-2A0A075B633 Gm8109-201ENSMUST00000194076 746 ntBASIC26.92■■□□□ 1.9
Trav8n-2A0A075B633 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
Trav8n-2A0A075B633 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Trav8n-2A0A075B633 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC26.85■■□□□ 1.89
Trav8n-2A0A075B633 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC26.81■■□□□ 1.88
Trav8n-2A0A075B633 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
Trav8n-2A0A075B633 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC26.78■■□□□ 1.88
Trav8n-2A0A075B633 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Trav8n-2A0A075B633 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC26.75■■□□□ 1.87
Trav8n-2A0A075B633 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Trav8n-2A0A075B633 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC26.7■■□□□ 1.86
Trav8n-2A0A075B633 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Trav8n-2A0A075B633 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.85
Trav8n-2A0A075B633 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
Trav8n-2A0A075B633 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Trav8n-2A0A075B633 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
Trav8n-2A0A075B633 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
Trav8n-2A0A075B633 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Trav8n-2A0A075B633 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
Trav8n-2A0A075B633 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC26.43■■□□□ 1.82
Trav8n-2A0A075B633 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Trav8n-2A0A075B633 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Trav8n-2A0A075B633 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC26.41■■□□□ 1.82
Trav8n-2A0A075B633 Gm17082-201ENSMUST00000166043 1091 ntBASIC26.36■■□□□ 1.81
Trav8n-2A0A075B633 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Trav8n-2A0A075B633 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
Trav8n-2A0A075B633 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Trav8n-2A0A075B633 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC26.28■■□□□ 1.8
Trav8n-2A0A075B633 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
Trav8n-2A0A075B633 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trav8n-2A0A075B633 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
Trav8n-2A0A075B633 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Trav8n-2A0A075B633 Gm27322-201ENSMUST00000184007 104 ntBASIC26.2■■□□□ 1.78
Trav8n-2A0A075B633 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC26.16■■□□□ 1.78
Trav8n-2A0A075B633 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
Retrieved 100 of 76,532 protein–RNA pairs in 15.1 ms