Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Ddx56Q9D0R4 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Ddx56Q9D0R4 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Ddx56Q9D0R4 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC26.75■■□□□ 1.87
Ddx56Q9D0R4 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC26.75■■□□□ 1.87
Ddx56Q9D0R4 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
Ddx56Q9D0R4 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
Ddx56Q9D0R4 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
Ddx56Q9D0R4 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
Ddx56Q9D0R4 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Ddx56Q9D0R4 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC26.73■■□□□ 1.87
Ddx56Q9D0R4 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Ddx56Q9D0R4 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC26.73■■□□□ 1.87
Ddx56Q9D0R4 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC26.72■■□□□ 1.87
Ddx56Q9D0R4 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Ddx56Q9D0R4 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Ddx56Q9D0R4 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC26.71■■□□□ 1.87
Ddx56Q9D0R4 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Ddx56Q9D0R4 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
Ddx56Q9D0R4 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC26.7■■□□□ 1.86
Ddx56Q9D0R4 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Ddx56Q9D0R4 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC26.67■■□□□ 1.86
Ddx56Q9D0R4 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Ddx56Q9D0R4 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
Ddx56Q9D0R4 Gm30346-201ENSMUST00000218641 1699 ntBASIC26.66■■□□□ 1.86
Ddx56Q9D0R4 Gm16148-201ENSMUST00000119653 893 ntBASIC26.65■■□□□ 1.86
Ddx56Q9D0R4 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
Ddx56Q9D0R4 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC26.64■■□□□ 1.85
Ddx56Q9D0R4 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
Ddx56Q9D0R4 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
Ddx56Q9D0R4 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC26.61■■□□□ 1.85
Ddx56Q9D0R4 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC26.6■■□□□ 1.85
Ddx56Q9D0R4 Gm6345-201ENSMUST00000180378 1691 ntBASIC26.59■■□□□ 1.85
Ddx56Q9D0R4 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Ddx56Q9D0R4 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
Ddx56Q9D0R4 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC26.56■■□□□ 1.84
Ddx56Q9D0R4 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
Ddx56Q9D0R4 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Ddx56Q9D0R4 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
Ddx56Q9D0R4 Zxda-201ENSMUST00000117281 2621 ntBASIC26.54■■□□□ 1.84
Ddx56Q9D0R4 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Ddx56Q9D0R4 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Ddx56Q9D0R4 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Ddx56Q9D0R4 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Ddx56Q9D0R4 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Ddx56Q9D0R4 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC26.5■■□□□ 1.83
Ddx56Q9D0R4 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Ddx56Q9D0R4 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Ddx56Q9D0R4 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Ddx56Q9D0R4 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Ddx56Q9D0R4 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
Ddx56Q9D0R4 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Ddx56Q9D0R4 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
Ddx56Q9D0R4 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Ddx56Q9D0R4 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Ddx56Q9D0R4 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
Ddx56Q9D0R4 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Ddx56Q9D0R4 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Ddx56Q9D0R4 Gm9905-201ENSMUST00000065740 1845 ntBASIC26.42■■□□□ 1.82
Ddx56Q9D0R4 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Ddx56Q9D0R4 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC26.4■■□□□ 1.82
Ddx56Q9D0R4 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
Ddx56Q9D0R4 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.82
Ddx56Q9D0R4 Gm6206-201ENSMUST00000133472 2199 ntBASIC26.39■■□□□ 1.81
Ddx56Q9D0R4 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
Ddx56Q9D0R4 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ddx56Q9D0R4 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Ddx56Q9D0R4 Gm43445-201ENSMUST00000198564 2091 ntBASIC26.36■■□□□ 1.81
Ddx56Q9D0R4 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC26.35■■□□□ 1.81
Ddx56Q9D0R4 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Ddx56Q9D0R4 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ddx56Q9D0R4 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ddx56Q9D0R4 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ddx56Q9D0R4 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ddx56Q9D0R4 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ddx56Q9D0R4 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC26.32■■□□□ 1.8
Ddx56Q9D0R4 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
Ddx56Q9D0R4 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Ddx56Q9D0R4 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Ddx56Q9D0R4 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
Ddx56Q9D0R4 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ddx56Q9D0R4 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Ddx56Q9D0R4 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Ddx56Q9D0R4 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Ddx56Q9D0R4 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ddx56Q9D0R4 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ddx56Q9D0R4 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ddx56Q9D0R4 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Ddx56Q9D0R4 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ddx56Q9D0R4 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
Ddx56Q9D0R4 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Ddx56Q9D0R4 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC26.23■■□□□ 1.79
Ddx56Q9D0R4 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Ddx56Q9D0R4 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
Ddx56Q9D0R4 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC26.19■■□□□ 1.78
Ddx56Q9D0R4 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Ddx56Q9D0R4 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Ddx56Q9D0R4 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
Ddx56Q9D0R4 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Ddx56Q9D0R4 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms