Protein–RNA interactions for Protein: Q8K353

Cystm1, Cysteine-rich and transmembrane domain-containing protein 1, mousemouse

Predictions only

Length 104 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cystm1Q8K353 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC15.79■□□□□ 0.12
Cystm1Q8K353 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cystm1Q8K353 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cystm1Q8K353 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cystm1Q8K353 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Cystm1Q8K353 Gm20634-201ENSMUST00000090779 2956 ntBASIC15.78■□□□□ 0.12
Cystm1Q8K353 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Cystm1Q8K353 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Cystm1Q8K353 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cystm1Q8K353 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC15.74■□□□□ 0.11
Cystm1Q8K353 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
Cystm1Q8K353 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cystm1Q8K353 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cystm1Q8K353 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cystm1Q8K353 Gm8109-201ENSMUST00000194076 746 ntBASIC15.71■□□□□ 0.11
Cystm1Q8K353 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Cystm1Q8K353 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cystm1Q8K353 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cystm1Q8K353 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cystm1Q8K353 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cystm1Q8K353 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cystm1Q8K353 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cystm1Q8K353 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cystm1Q8K353 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cystm1Q8K353 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Cystm1Q8K353 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Cystm1Q8K353 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cystm1Q8K353 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Cystm1Q8K353 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Cystm1Q8K353 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Cystm1Q8K353 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cystm1Q8K353 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cystm1Q8K353 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Cystm1Q8K353 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cystm1Q8K353 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Cystm1Q8K353 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cystm1Q8K353 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Cystm1Q8K353 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC15.64■□□□□ 0.09
Cystm1Q8K353 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC15.64■□□□□ 0.09
Cystm1Q8K353 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC15.63■□□□□ 0.09
Cystm1Q8K353 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cystm1Q8K353 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Cystm1Q8K353 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cystm1Q8K353 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
Cystm1Q8K353 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cystm1Q8K353 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cystm1Q8K353 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Cystm1Q8K353 Gm17082-201ENSMUST00000166043 1091 ntBASIC15.61■□□□□ 0.09
Cystm1Q8K353 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Cystm1Q8K353 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Cystm1Q8K353 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
Cystm1Q8K353 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
Cystm1Q8K353 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
Cystm1Q8K353 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Cystm1Q8K353 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Cystm1Q8K353 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Cystm1Q8K353 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Cystm1Q8K353 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
Cystm1Q8K353 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Cystm1Q8K353 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Cystm1Q8K353 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Cystm1Q8K353 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Cystm1Q8K353 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Cystm1Q8K353 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Cystm1Q8K353 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Cystm1Q8K353 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Cystm1Q8K353 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Cystm1Q8K353 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cystm1Q8K353 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cystm1Q8K353 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cystm1Q8K353 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Cystm1Q8K353 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Cystm1Q8K353 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Cystm1Q8K353 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cystm1Q8K353 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cystm1Q8K353 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cystm1Q8K353 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cystm1Q8K353 Gm27322-201ENSMUST00000184007 104 ntBASIC15.5■□□□□ 0.07
Cystm1Q8K353 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Cystm1Q8K353 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Cystm1Q8K353 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Cystm1Q8K353 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cystm1Q8K353 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
Cystm1Q8K353 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cystm1Q8K353 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Cystm1Q8K353 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Cystm1Q8K353 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cystm1Q8K353 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cystm1Q8K353 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cystm1Q8K353 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC15.44■□□□□ 0.06
Cystm1Q8K353 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC15.44■□□□□ 0.06
Cystm1Q8K353 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cystm1Q8K353 Gm17641-201ENSMUST00000166328 2350 ntBASIC15.42■□□□□ 0.06
Cystm1Q8K353 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Cystm1Q8K353 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Cystm1Q8K353 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC15.4■□□□□ 0.06
Cystm1Q8K353 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Cystm1Q8K353 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Cystm1Q8K353 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Cystm1Q8K353 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 11.8 ms