Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm2415-204ENSMUST00000190235 2004 ntBASIC28.64■■■□□ 2.17
Prpf40aQ9R1C7 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
Prpf40aQ9R1C7 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Prpf40aQ9R1C7 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC28.57■■■□□ 2.16
Prpf40aQ9R1C7 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
Prpf40aQ9R1C7 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
Prpf40aQ9R1C7 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
Prpf40aQ9R1C7 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Prpf40aQ9R1C7 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Prpf40aQ9R1C7 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
Prpf40aQ9R1C7 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
Prpf40aQ9R1C7 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Prpf40aQ9R1C7 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC28.44■■■□□ 2.14
Prpf40aQ9R1C7 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC28.42■■■□□ 2.14
Prpf40aQ9R1C7 Gm6658-202ENSMUST00000209493 1885 ntBASIC28.41■■■□□ 2.14
Prpf40aQ9R1C7 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
Prpf40aQ9R1C7 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Prpf40aQ9R1C7 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Prpf40aQ9R1C7 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC28.37■■■□□ 2.13
Prpf40aQ9R1C7 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Prpf40aQ9R1C7 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC28.35■■■□□ 2.13
Prpf40aQ9R1C7 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Prpf40aQ9R1C7 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Prpf40aQ9R1C7 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Prpf40aQ9R1C7 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Prpf40aQ9R1C7 Gm24804-201ENSMUST00000174982 85 ntBASIC28.27■■■□□ 2.12
Prpf40aQ9R1C7 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
Prpf40aQ9R1C7 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
Prpf40aQ9R1C7 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC28.24■■■□□ 2.11
Prpf40aQ9R1C7 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
Prpf40aQ9R1C7 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Prpf40aQ9R1C7 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC28.23■■■□□ 2.11
Prpf40aQ9R1C7 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
Prpf40aQ9R1C7 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
Prpf40aQ9R1C7 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC28.2■■■□□ 2.1
Prpf40aQ9R1C7 AC153504.1-201ENSMUST00000218379 2290 ntBASIC28.19■■■□□ 2.1
Prpf40aQ9R1C7 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Prpf40aQ9R1C7 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC28.18■■■□□ 2.1
Prpf40aQ9R1C7 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
Prpf40aQ9R1C7 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Prpf40aQ9R1C7 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Prpf40aQ9R1C7 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Prpf40aQ9R1C7 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
Prpf40aQ9R1C7 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
Prpf40aQ9R1C7 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Prpf40aQ9R1C7 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
Prpf40aQ9R1C7 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Prpf40aQ9R1C7 Peli2-204ENSMUST00000226513 1320 ntBASIC28.07■■■□□ 2.08
Prpf40aQ9R1C7 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Prpf40aQ9R1C7 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Prpf40aQ9R1C7 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Prpf40aQ9R1C7 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC28.05■■■□□ 2.08
Prpf40aQ9R1C7 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC28.04■■■□□ 2.08
Prpf40aQ9R1C7 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Prpf40aQ9R1C7 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
Prpf40aQ9R1C7 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC28.02■■■□□ 2.08
Prpf40aQ9R1C7 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
Prpf40aQ9R1C7 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC28.01■■■□□ 2.08
Prpf40aQ9R1C7 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC28.01■■■□□ 2.07
Prpf40aQ9R1C7 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
Prpf40aQ9R1C7 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC27.99■■■□□ 2.07
Prpf40aQ9R1C7 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
Prpf40aQ9R1C7 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC27.98■■■□□ 2.07
Prpf40aQ9R1C7 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Prpf40aQ9R1C7 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC27.96■■■□□ 2.07
Prpf40aQ9R1C7 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC27.95■■■□□ 2.07
Prpf40aQ9R1C7 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Prpf40aQ9R1C7 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC27.94■■■□□ 2.06
Prpf40aQ9R1C7 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC27.91■■■□□ 2.06
Prpf40aQ9R1C7 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Prpf40aQ9R1C7 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC27.9■■■□□ 2.06
Prpf40aQ9R1C7 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
Prpf40aQ9R1C7 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC27.89■■■□□ 2.06
Prpf40aQ9R1C7 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC27.89■■■□□ 2.06
Prpf40aQ9R1C7 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Prpf40aQ9R1C7 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC27.88■■■□□ 2.05
Prpf40aQ9R1C7 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Prpf40aQ9R1C7 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
Prpf40aQ9R1C7 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC27.87■■■□□ 2.05
Prpf40aQ9R1C7 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
Prpf40aQ9R1C7 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC27.84■■■□□ 2.05
Prpf40aQ9R1C7 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC27.84■■■□□ 2.05
Prpf40aQ9R1C7 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
Prpf40aQ9R1C7 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Prpf40aQ9R1C7 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC27.81■■■□□ 2.04
Prpf40aQ9R1C7 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
Prpf40aQ9R1C7 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
Prpf40aQ9R1C7 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
Prpf40aQ9R1C7 Gm16148-201ENSMUST00000119653 893 ntBASIC27.79■■■□□ 2.04
Prpf40aQ9R1C7 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC27.78■■■□□ 2.04
Prpf40aQ9R1C7 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Prpf40aQ9R1C7 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC27.76■■■□□ 2.04
Prpf40aQ9R1C7 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
Prpf40aQ9R1C7 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC27.76■■■□□ 2.03
Prpf40aQ9R1C7 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC27.72■■■□□ 2.03
Prpf40aQ9R1C7 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
Prpf40aQ9R1C7 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
Prpf40aQ9R1C7 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC27.7■■■□□ 2.02
Prpf40aQ9R1C7 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
Prpf40aQ9R1C7 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC27.69■■■□□ 2.02
Retrieved 100 of 76,532 protein–RNA pairs in 70 ms