Protein–RNA interactions for Protein: Q8BQZ5

Cpsf4, Cleavage and polyadenylation specificity factor subunit 4, mousemouse

Known RBP Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4Q8BQZ5 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Cpsf4Q8BQZ5 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Cpsf4Q8BQZ5 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Cpsf4Q8BQZ5 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Cpsf4Q8BQZ5 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC25.09■■□□□ 1.61
Cpsf4Q8BQZ5 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC25.07■■□□□ 1.6
Cpsf4Q8BQZ5 Gm24804-201ENSMUST00000174982 85 ntBASIC25.06■■□□□ 1.6
Cpsf4Q8BQZ5 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
Cpsf4Q8BQZ5 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Cpsf4Q8BQZ5 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Cpsf4Q8BQZ5 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.6
Cpsf4Q8BQZ5 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Cpsf4Q8BQZ5 Gm6658-202ENSMUST00000209493 1885 ntBASIC24.99■■□□□ 1.59
Cpsf4Q8BQZ5 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC24.98■■□□□ 1.59
Cpsf4Q8BQZ5 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC24.98■■□□□ 1.59
Cpsf4Q8BQZ5 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC24.98■■□□□ 1.59
Cpsf4Q8BQZ5 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC24.93■■□□□ 1.58
Cpsf4Q8BQZ5 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Cpsf4Q8BQZ5 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
Cpsf4Q8BQZ5 Mipep-204ENSMUST00000225043 1548 ntBASIC24.9■■□□□ 1.58
Cpsf4Q8BQZ5 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Cpsf4Q8BQZ5 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Cpsf4Q8BQZ5 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC24.85■■□□□ 1.57
Cpsf4Q8BQZ5 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
Cpsf4Q8BQZ5 AC153504.1-201ENSMUST00000218379 2290 ntBASIC24.84■■□□□ 1.57
Cpsf4Q8BQZ5 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Cpsf4Q8BQZ5 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Cpsf4Q8BQZ5 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
Cpsf4Q8BQZ5 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
Cpsf4Q8BQZ5 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
Cpsf4Q8BQZ5 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Cpsf4Q8BQZ5 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
Cpsf4Q8BQZ5 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
Cpsf4Q8BQZ5 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Cpsf4Q8BQZ5 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC24.75■■□□□ 1.55
Cpsf4Q8BQZ5 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Cpsf4Q8BQZ5 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
Cpsf4Q8BQZ5 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC24.72■■□□□ 1.55
Cpsf4Q8BQZ5 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
Cpsf4Q8BQZ5 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
Cpsf4Q8BQZ5 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
Cpsf4Q8BQZ5 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Cpsf4Q8BQZ5 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
Cpsf4Q8BQZ5 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
Cpsf4Q8BQZ5 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Cpsf4Q8BQZ5 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Cpsf4Q8BQZ5 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
Cpsf4Q8BQZ5 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC24.68■■□□□ 1.54
Cpsf4Q8BQZ5 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Cpsf4Q8BQZ5 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Cpsf4Q8BQZ5 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Cpsf4Q8BQZ5 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
Cpsf4Q8BQZ5 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Cpsf4Q8BQZ5 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Cpsf4Q8BQZ5 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
Cpsf4Q8BQZ5 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Cpsf4Q8BQZ5 Peli2-204ENSMUST00000226513 1320 ntBASIC24.58■■□□□ 1.52
Cpsf4Q8BQZ5 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Cpsf4Q8BQZ5 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Cpsf4Q8BQZ5 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC24.56■■□□□ 1.52
Cpsf4Q8BQZ5 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
Cpsf4Q8BQZ5 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Cpsf4Q8BQZ5 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Cpsf4Q8BQZ5 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Cpsf4Q8BQZ5 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Cpsf4Q8BQZ5 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC24.53■■□□□ 1.52
Cpsf4Q8BQZ5 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Cpsf4Q8BQZ5 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Cpsf4Q8BQZ5 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Cpsf4Q8BQZ5 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC24.52■■□□□ 1.52
Cpsf4Q8BQZ5 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC24.51■■□□□ 1.51
Cpsf4Q8BQZ5 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC24.5■■□□□ 1.51
Cpsf4Q8BQZ5 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC24.5■■□□□ 1.51
Cpsf4Q8BQZ5 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC24.5■■□□□ 1.51
Cpsf4Q8BQZ5 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
Cpsf4Q8BQZ5 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Cpsf4Q8BQZ5 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Cpsf4Q8BQZ5 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Cpsf4Q8BQZ5 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC24.46■■□□□ 1.51
Cpsf4Q8BQZ5 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
Cpsf4Q8BQZ5 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC24.46■■□□□ 1.51
Cpsf4Q8BQZ5 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Cpsf4Q8BQZ5 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Cpsf4Q8BQZ5 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC24.44■■□□□ 1.5
Cpsf4Q8BQZ5 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC24.43■■□□□ 1.5
Cpsf4Q8BQZ5 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC24.42■■□□□ 1.5
Cpsf4Q8BQZ5 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Cpsf4Q8BQZ5 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Cpsf4Q8BQZ5 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Cpsf4Q8BQZ5 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Cpsf4Q8BQZ5 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Cpsf4Q8BQZ5 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Cpsf4Q8BQZ5 Gm16148-201ENSMUST00000119653 893 ntBASIC24.36■■□□□ 1.49
Cpsf4Q8BQZ5 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Cpsf4Q8BQZ5 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC24.36■■□□□ 1.49
Cpsf4Q8BQZ5 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Cpsf4Q8BQZ5 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Cpsf4Q8BQZ5 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Cpsf4Q8BQZ5 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Cpsf4Q8BQZ5 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Retrieved 100 of 76,532 protein–RNA pairs in 71.9 ms