Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Smarca1Q6PGB8 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
Smarca1Q6PGB8 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
Smarca1Q6PGB8 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
Smarca1Q6PGB8 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
Smarca1Q6PGB8 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
Smarca1Q6PGB8 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
Smarca1Q6PGB8 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC29.23■■■□□ 2.27
Smarca1Q6PGB8 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
Smarca1Q6PGB8 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Smarca1Q6PGB8 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Smarca1Q6PGB8 Gm6658-202ENSMUST00000209493 1885 ntBASIC29.12■■■□□ 2.25
Smarca1Q6PGB8 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
Smarca1Q6PGB8 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC29.1■■■□□ 2.25
Smarca1Q6PGB8 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
Smarca1Q6PGB8 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC29.08■■■□□ 2.25
Smarca1Q6PGB8 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Smarca1Q6PGB8 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Smarca1Q6PGB8 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC29.05■■■□□ 2.24
Smarca1Q6PGB8 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
Smarca1Q6PGB8 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC29.01■■■□□ 2.23
Smarca1Q6PGB8 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC29■■■□□ 2.23
Smarca1Q6PGB8 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC28.98■■■□□ 2.23
Smarca1Q6PGB8 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC28.97■■■□□ 2.23
Smarca1Q6PGB8 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Smarca1Q6PGB8 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Smarca1Q6PGB8 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
Smarca1Q6PGB8 Mipep-204ENSMUST00000225043 1548 ntBASIC28.95■■■□□ 2.23
Smarca1Q6PGB8 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
Smarca1Q6PGB8 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
Smarca1Q6PGB8 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
Smarca1Q6PGB8 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
Smarca1Q6PGB8 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC28.94■■■□□ 2.22
Smarca1Q6PGB8 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC28.93■■■□□ 2.22
Smarca1Q6PGB8 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
Smarca1Q6PGB8 AC153504.1-201ENSMUST00000218379 2290 ntBASIC28.92■■■□□ 2.22
Smarca1Q6PGB8 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC28.92■■■□□ 2.22
Smarca1Q6PGB8 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.21
Smarca1Q6PGB8 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC28.86■■■□□ 2.21
Smarca1Q6PGB8 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Smarca1Q6PGB8 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
Smarca1Q6PGB8 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC28.81■■■□□ 2.2
Smarca1Q6PGB8 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC28.81■■■□□ 2.2
Smarca1Q6PGB8 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC28.8■■■□□ 2.2
Smarca1Q6PGB8 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC28.8■■■□□ 2.2
Smarca1Q6PGB8 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
Smarca1Q6PGB8 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
Smarca1Q6PGB8 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC28.77■■■□□ 2.2
Smarca1Q6PGB8 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
Smarca1Q6PGB8 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Smarca1Q6PGB8 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC28.76■■■□□ 2.19
Smarca1Q6PGB8 Peli2-204ENSMUST00000226513 1320 ntBASIC28.75■■■□□ 2.19
Smarca1Q6PGB8 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
Smarca1Q6PGB8 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC28.73■■■□□ 2.19
Smarca1Q6PGB8 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC28.7■■■□□ 2.19
Smarca1Q6PGB8 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
Smarca1Q6PGB8 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC28.69■■■□□ 2.18
Smarca1Q6PGB8 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC28.68■■■□□ 2.18
Smarca1Q6PGB8 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Smarca1Q6PGB8 Zfp131-205ENSMUST00000223812 663 ntBASIC28.67■■■□□ 2.18
Smarca1Q6PGB8 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC28.67■■■□□ 2.18
Smarca1Q6PGB8 Gm16148-201ENSMUST00000119653 893 ntBASIC28.66■■■□□ 2.18
Smarca1Q6PGB8 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
Smarca1Q6PGB8 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Smarca1Q6PGB8 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
Smarca1Q6PGB8 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Smarca1Q6PGB8 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC28.62■■■□□ 2.17
Smarca1Q6PGB8 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Smarca1Q6PGB8 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC28.61■■■□□ 2.17
Smarca1Q6PGB8 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC28.6■■■□□ 2.17
Smarca1Q6PGB8 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC28.59■■■□□ 2.17
Smarca1Q6PGB8 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Smarca1Q6PGB8 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Smarca1Q6PGB8 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Smarca1Q6PGB8 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Smarca1Q6PGB8 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC28.56■■■□□ 2.16
Smarca1Q6PGB8 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Smarca1Q6PGB8 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Smarca1Q6PGB8 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Smarca1Q6PGB8 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Smarca1Q6PGB8 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Smarca1Q6PGB8 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Smarca1Q6PGB8 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
Smarca1Q6PGB8 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
Smarca1Q6PGB8 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
Smarca1Q6PGB8 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
Smarca1Q6PGB8 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC28.48■■■□□ 2.15
Smarca1Q6PGB8 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
Smarca1Q6PGB8 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC28.42■■■□□ 2.14
Smarca1Q6PGB8 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Smarca1Q6PGB8 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Smarca1Q6PGB8 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Smarca1Q6PGB8 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
Smarca1Q6PGB8 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC28.39■■■□□ 2.14
Smarca1Q6PGB8 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Smarca1Q6PGB8 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
Smarca1Q6PGB8 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC28.36■■■□□ 2.13
Smarca1Q6PGB8 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC28.36■■■□□ 2.13
Smarca1Q6PGB8 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC28.36■■■□□ 2.13
Smarca1Q6PGB8 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms