Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC28.26■■■□□ 2.11
Nr1i3O35627 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
Nr1i3O35627 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
Nr1i3O35627 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC28.23■■■□□ 2.11
Nr1i3O35627 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Nr1i3O35627 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
Nr1i3O35627 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
Nr1i3O35627 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Nr1i3O35627 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC28.19■■■□□ 2.1
Nr1i3O35627 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Nr1i3O35627 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Nr1i3O35627 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
Nr1i3O35627 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Nr1i3O35627 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC28.15■■■□□ 2.1
Nr1i3O35627 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.09
Nr1i3O35627 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC28.13■■■□□ 2.09
Nr1i3O35627 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC28.13■■■□□ 2.09
Nr1i3O35627 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Nr1i3O35627 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Nr1i3O35627 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC28.08■■■□□ 2.09
Nr1i3O35627 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC28.08■■■□□ 2.09
Nr1i3O35627 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC28.06■■■□□ 2.08
Nr1i3O35627 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
Nr1i3O35627 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Nr1i3O35627 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC28.02■■■□□ 2.08
Nr1i3O35627 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Nr1i3O35627 Gm17082-201ENSMUST00000166043 1091 ntBASIC28.01■■■□□ 2.07
Nr1i3O35627 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC28.01■■■□□ 2.07
Nr1i3O35627 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC27.98■■■□□ 2.07
Nr1i3O35627 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC27.98■■■□□ 2.07
Nr1i3O35627 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC27.98■■■□□ 2.07
Nr1i3O35627 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Nr1i3O35627 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
Nr1i3O35627 AC166822.3-201ENSMUST00000227394 661 ntBASIC27.96■■■□□ 2.07
Nr1i3O35627 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC27.95■■■□□ 2.07
Nr1i3O35627 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
Nr1i3O35627 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC27.94■■■□□ 2.06
Nr1i3O35627 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Nr1i3O35627 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC27.93■■■□□ 2.06
Nr1i3O35627 Gm27322-201ENSMUST00000184007 104 ntBASIC27.93■■■□□ 2.06
Nr1i3O35627 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC27.92■■■□□ 2.06
Nr1i3O35627 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Nr1i3O35627 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Nr1i3O35627 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
Nr1i3O35627 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC27.9■■■□□ 2.06
Nr1i3O35627 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Nr1i3O35627 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Nr1i3O35627 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
Nr1i3O35627 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC27.85■■■□□ 2.05
Nr1i3O35627 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
Nr1i3O35627 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
Nr1i3O35627 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
Nr1i3O35627 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
Nr1i3O35627 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
Nr1i3O35627 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
Nr1i3O35627 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
Nr1i3O35627 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
Nr1i3O35627 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC27.79■■■□□ 2.04
Nr1i3O35627 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
Nr1i3O35627 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC27.78■■■□□ 2.04
Nr1i3O35627 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC27.77■■■□□ 2.04
Nr1i3O35627 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Nr1i3O35627 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC27.77■■■□□ 2.04
Nr1i3O35627 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
Nr1i3O35627 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
Nr1i3O35627 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
Nr1i3O35627 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
Nr1i3O35627 Gm9905-201ENSMUST00000065740 1845 ntBASIC27.71■■■□□ 2.03
Nr1i3O35627 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC27.71■■■□□ 2.03
Nr1i3O35627 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC27.7■■■□□ 2.03
Nr1i3O35627 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
Nr1i3O35627 Zxda-201ENSMUST00000117281 2621 ntBASIC27.68■■■□□ 2.02
Nr1i3O35627 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC27.66■■■□□ 2.02
Nr1i3O35627 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
Nr1i3O35627 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
Nr1i3O35627 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
Nr1i3O35627 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC27.63■■■□□ 2.01
Nr1i3O35627 Gm6206-201ENSMUST00000133472 2199 ntBASIC27.6■■■□□ 2.01
Nr1i3O35627 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Nr1i3O35627 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC27.59■■■□□ 2.01
Nr1i3O35627 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
Nr1i3O35627 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC27.59■■■□□ 2.01
Nr1i3O35627 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC27.59■■■□□ 2.01
Nr1i3O35627 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC27.56■■■□□ 2
Nr1i3O35627 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC27.56■■■□□ 2
Nr1i3O35627 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC27.55■■■□□ 2
Nr1i3O35627 Gm6345-201ENSMUST00000180378 1691 ntBASIC27.52■■■□□ 2
Nr1i3O35627 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Nr1i3O35627 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC27.52■■■□□ 2
Nr1i3O35627 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC27.51■■□□□ 1.99
Nr1i3O35627 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC27.51■■□□□ 1.99
Nr1i3O35627 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC27.5■■□□□ 1.99
Nr1i3O35627 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
Nr1i3O35627 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC27.5■■□□□ 1.99
Nr1i3O35627 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Nr1i3O35627 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC27.49■■□□□ 1.99
Nr1i3O35627 Gm43445-201ENSMUST00000198564 2091 ntBASIC27.48■■□□□ 1.99
Nr1i3O35627 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC27.48■■□□□ 1.99
Nr1i3O35627 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Nr1i3O35627 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms