Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdhgb8A0A140LI48 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdhgb8A0A140LI48 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Pcdhgb8A0A140LI48 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Pcdhgb8A0A140LI48 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Pcdhgb8A0A140LI48 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Pcdhgb8A0A140LI48 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
Pcdhgb8A0A140LI48 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC23.07■■□□□ 1.28
Pcdhgb8A0A140LI48 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Pcdhgb8A0A140LI48 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Pcdhgb8A0A140LI48 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Pcdhgb8A0A140LI48 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Pcdhgb8A0A140LI48 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
Pcdhgb8A0A140LI48 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Pcdhgb8A0A140LI48 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Pcdhgb8A0A140LI48 Gm9905-201ENSMUST00000065740 1845 ntBASIC22.98■■□□□ 1.27
Pcdhgb8A0A140LI48 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Pcdhgb8A0A140LI48 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Pcdhgb8A0A140LI48 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
Pcdhgb8A0A140LI48 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Pcdhgb8A0A140LI48 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Pcdhgb8A0A140LI48 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Pcdhgb8A0A140LI48 Gm24804-201ENSMUST00000174982 85 ntBASIC22.94■■□□□ 1.26
Pcdhgb8A0A140LI48 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Pcdhgb8A0A140LI48 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
Pcdhgb8A0A140LI48 AL845457.1-201ENSMUST00000197244 68 ntBASIC22.93■■□□□ 1.26
Pcdhgb8A0A140LI48 AC166822.3-201ENSMUST00000227394 661 ntBASIC22.93■■□□□ 1.26
Pcdhgb8A0A140LI48 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC22.93■■□□□ 1.26
Pcdhgb8A0A140LI48 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
Pcdhgb8A0A140LI48 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Pcdhgb8A0A140LI48 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Pcdhgb8A0A140LI48 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC22.9■■□□□ 1.26
Pcdhgb8A0A140LI48 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC22.9■■□□□ 1.26
Pcdhgb8A0A140LI48 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Pcdhgb8A0A140LI48 Gm6206-201ENSMUST00000133472 2199 ntBASIC22.89■■□□□ 1.26
Pcdhgb8A0A140LI48 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC22.89■■□□□ 1.25
Pcdhgb8A0A140LI48 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC22.88■■□□□ 1.25
Pcdhgb8A0A140LI48 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Pcdhgb8A0A140LI48 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Pcdhgb8A0A140LI48 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Pcdhgb8A0A140LI48 Gm6658-202ENSMUST00000209493 1885 ntBASIC22.85■■□□□ 1.25
Pcdhgb8A0A140LI48 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Pcdhgb8A0A140LI48 Zfp131-207ENSMUST00000224946 1783 ntBASIC22.84■■□□□ 1.25
Pcdhgb8A0A140LI48 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
Pcdhgb8A0A140LI48 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Pcdhgb8A0A140LI48 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Pcdhgb8A0A140LI48 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Pcdhgb8A0A140LI48 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Pcdhgb8A0A140LI48 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC22.76■■□□□ 1.23
Pcdhgb8A0A140LI48 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC22.75■■□□□ 1.23
Pcdhgb8A0A140LI48 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Pcdhgb8A0A140LI48 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC22.73■■□□□ 1.23
Pcdhgb8A0A140LI48 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Pcdhgb8A0A140LI48 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Pcdhgb8A0A140LI48 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Pcdhgb8A0A140LI48 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Pcdhgb8A0A140LI48 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC22.71■■□□□ 1.23
Pcdhgb8A0A140LI48 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Pcdhgb8A0A140LI48 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Pcdhgb8A0A140LI48 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.22
Pcdhgb8A0A140LI48 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
Pcdhgb8A0A140LI48 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Pcdhgb8A0A140LI48 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Pcdhgb8A0A140LI48 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Pcdhgb8A0A140LI48 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC22.68■■□□□ 1.22
Pcdhgb8A0A140LI48 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Pcdhgb8A0A140LI48 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Pcdhgb8A0A140LI48 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Pcdhgb8A0A140LI48 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Pcdhgb8A0A140LI48 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Pcdhgb8A0A140LI48 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Pcdhgb8A0A140LI48 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Pcdhgb8A0A140LI48 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Pcdhgb8A0A140LI48 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
Pcdhgb8A0A140LI48 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Pcdhgb8A0A140LI48 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC22.6■■□□□ 1.21
Pcdhgb8A0A140LI48 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Pcdhgb8A0A140LI48 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Pcdhgb8A0A140LI48 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
Pcdhgb8A0A140LI48 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Pcdhgb8A0A140LI48 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Pcdhgb8A0A140LI48 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Pcdhgb8A0A140LI48 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
Pcdhgb8A0A140LI48 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
Pcdhgb8A0A140LI48 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Pcdhgb8A0A140LI48 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Pcdhgb8A0A140LI48 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Pcdhgb8A0A140LI48 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Pcdhgb8A0A140LI48 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC22.52■■□□□ 1.2
Pcdhgb8A0A140LI48 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdhgb8A0A140LI48 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdhgb8A0A140LI48 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pcdhgb8A0A140LI48 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pcdhgb8A0A140LI48 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pcdhgb8A0A140LI48 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC22.5■■□□□ 1.19
Pcdhgb8A0A140LI48 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Pcdhgb8A0A140LI48 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Pcdhgb8A0A140LI48 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Pcdhgb8A0A140LI48 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC22.47■■□□□ 1.19
Pcdhgb8A0A140LI48 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms