Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Gm25239-201ENSMUST00000174915 86 ntBASIC32.36■■■□□ 2.77
Pcdhgb8A0A140LI48 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
Pcdhgb8A0A140LI48 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
Pcdhgb8A0A140LI48 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Pcdhgb8A0A140LI48 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Pcdhgb8A0A140LI48 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC28.75■■■□□ 2.19
Pcdhgb8A0A140LI48 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Pcdhgb8A0A140LI48 Gm15042-201ENSMUST00000120212 883 ntBASIC28.38■■■□□ 2.13
Pcdhgb8A0A140LI48 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Pcdhgb8A0A140LI48 Psd-208ENSMUST00000224556 2034 ntBASIC28.28■■■□□ 2.12
Pcdhgb8A0A140LI48 Gm24109-201ENSMUST00000175489 103 ntBASIC27.99■■■□□ 2.07
Pcdhgb8A0A140LI48 Gm15045-201ENSMUST00000117359 883 ntBASIC27.73■■■□□ 2.03
Pcdhgb8A0A140LI48 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Pcdhgb8A0A140LI48 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
Pcdhgb8A0A140LI48 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
Pcdhgb8A0A140LI48 Gm23366-201ENSMUST00000175022 89 ntBASIC27.1■■□□□ 1.93
Pcdhgb8A0A140LI48 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
Pcdhgb8A0A140LI48 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Pcdhgb8A0A140LI48 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
Pcdhgb8A0A140LI48 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
Pcdhgb8A0A140LI48 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Pcdhgb8A0A140LI48 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Pcdhgb8A0A140LI48 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Pcdhgb8A0A140LI48 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Pcdhgb8A0A140LI48 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC26.61■■□□□ 1.85
Pcdhgb8A0A140LI48 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
Pcdhgb8A0A140LI48 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Pcdhgb8A0A140LI48 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Pcdhgb8A0A140LI48 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Pcdhgb8A0A140LI48 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC26.27■■□□□ 1.8
Pcdhgb8A0A140LI48 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
Pcdhgb8A0A140LI48 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
Pcdhgb8A0A140LI48 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Pcdhgb8A0A140LI48 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Pcdhgb8A0A140LI48 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
Pcdhgb8A0A140LI48 AC153911.1-202ENSMUST00000218534 1034 ntBASIC26.03■■□□□ 1.76
Pcdhgb8A0A140LI48 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Pcdhgb8A0A140LI48 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC25.86■■□□□ 1.73
Pcdhgb8A0A140LI48 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
Pcdhgb8A0A140LI48 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC25.84■■□□□ 1.73
Pcdhgb8A0A140LI48 Gm42596-201ENSMUST00000196305 1958 ntBASIC25.81■■□□□ 1.72
Pcdhgb8A0A140LI48 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Pcdhgb8A0A140LI48 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC25.8■■□□□ 1.72
Pcdhgb8A0A140LI48 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
Pcdhgb8A0A140LI48 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC25.8■■□□□ 1.72
Pcdhgb8A0A140LI48 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC25.77■■□□□ 1.72
Pcdhgb8A0A140LI48 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Pcdhgb8A0A140LI48 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Pcdhgb8A0A140LI48 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Pcdhgb8A0A140LI48 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC25.63■■□□□ 1.69
Pcdhgb8A0A140LI48 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Pcdhgb8A0A140LI48 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC25.59■■□□□ 1.69
Pcdhgb8A0A140LI48 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Pcdhgb8A0A140LI48 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Pcdhgb8A0A140LI48 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
Pcdhgb8A0A140LI48 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC25.53■■□□□ 1.68
Pcdhgb8A0A140LI48 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Pcdhgb8A0A140LI48 Gm25238-201ENSMUST00000174914 89 ntBASIC25.49■■□□□ 1.67
Pcdhgb8A0A140LI48 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Pcdhgb8A0A140LI48 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Pcdhgb8A0A140LI48 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC25.32■■□□□ 1.64
Pcdhgb8A0A140LI48 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC25.18■■□□□ 1.62
Pcdhgb8A0A140LI48 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
Pcdhgb8A0A140LI48 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.62
Pcdhgb8A0A140LI48 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Pcdhgb8A0A140LI48 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Pcdhgb8A0A140LI48 Gm10524-201ENSMUST00000181931 1893 ntBASIC25.02■■□□□ 1.6
Pcdhgb8A0A140LI48 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Pcdhgb8A0A140LI48 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC24.99■■□□□ 1.59
Pcdhgb8A0A140LI48 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC24.96■■□□□ 1.59
Pcdhgb8A0A140LI48 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC24.91■■□□□ 1.58
Pcdhgb8A0A140LI48 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
Pcdhgb8A0A140LI48 Gm27325-201ENSMUST00000175467 74 ntBASIC24.89■■□□□ 1.58
Pcdhgb8A0A140LI48 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
Pcdhgb8A0A140LI48 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC24.88■■□□□ 1.57
Pcdhgb8A0A140LI48 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Pcdhgb8A0A140LI48 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Pcdhgb8A0A140LI48 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC24.85■■□□□ 1.57
Pcdhgb8A0A140LI48 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
Pcdhgb8A0A140LI48 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Pcdhgb8A0A140LI48 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
Pcdhgb8A0A140LI48 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC24.7■■□□□ 1.54
Pcdhgb8A0A140LI48 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.54
Pcdhgb8A0A140LI48 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Pcdhgb8A0A140LI48 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC24.54■■□□□ 1.52
Pcdhgb8A0A140LI48 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
Pcdhgb8A0A140LI48 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Pcdhgb8A0A140LI48 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Pcdhgb8A0A140LI48 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
Pcdhgb8A0A140LI48 Gm25262-201ENSMUST00000174934 133 ntBASIC24.47■■□□□ 1.51
Pcdhgb8A0A140LI48 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC24.47■■□□□ 1.51
Pcdhgb8A0A140LI48 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Pcdhgb8A0A140LI48 Rab21-202ENSMUST00000218831 843 ntBASIC24.42■■□□□ 1.5
Pcdhgb8A0A140LI48 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Pcdhgb8A0A140LI48 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Pcdhgb8A0A140LI48 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
Pcdhgb8A0A140LI48 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC24.39■■□□□ 1.49
Pcdhgb8A0A140LI48 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Pcdhgb8A0A140LI48 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Pcdhgb8A0A140LI48 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC24.36■■□□□ 1.49
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms