Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Trav1A0A075B5Z4 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
Trav1A0A075B5Z4 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC24.46■■□□□ 1.51
Trav1A0A075B5Z4 AC153504.1-201ENSMUST00000218379 2290 ntBASIC24.46■■□□□ 1.51
Trav1A0A075B5Z4 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
Trav1A0A075B5Z4 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC24.44■■□□□ 1.5
Trav1A0A075B5Z4 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Trav1A0A075B5Z4 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
Trav1A0A075B5Z4 Gm17082-201ENSMUST00000166043 1091 ntBASIC24.41■■□□□ 1.5
Trav1A0A075B5Z4 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
Trav1A0A075B5Z4 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC24.4■■□□□ 1.5
Trav1A0A075B5Z4 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC24.4■■□□□ 1.5
Trav1A0A075B5Z4 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC24.4■■□□□ 1.5
Trav1A0A075B5Z4 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC24.38■■□□□ 1.49
Trav1A0A075B5Z4 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Trav1A0A075B5Z4 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
Trav1A0A075B5Z4 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
Trav1A0A075B5Z4 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
Trav1A0A075B5Z4 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
Trav1A0A075B5Z4 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Trav1A0A075B5Z4 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Trav1A0A075B5Z4 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC24.33■■□□□ 1.49
Trav1A0A075B5Z4 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Trav1A0A075B5Z4 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
Trav1A0A075B5Z4 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC24.32■■□□□ 1.48
Trav1A0A075B5Z4 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Trav1A0A075B5Z4 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
Trav1A0A075B5Z4 Gm27322-201ENSMUST00000184007 104 ntBASIC24.31■■□□□ 1.48
Trav1A0A075B5Z4 AC166822.3-201ENSMUST00000227394 661 ntBASIC24.31■■□□□ 1.48
Trav1A0A075B5Z4 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Trav1A0A075B5Z4 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC24.29■■□□□ 1.48
Trav1A0A075B5Z4 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Trav1A0A075B5Z4 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Trav1A0A075B5Z4 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Trav1A0A075B5Z4 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC24.25■■□□□ 1.47
Trav1A0A075B5Z4 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC24.25■■□□□ 1.47
Trav1A0A075B5Z4 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Trav1A0A075B5Z4 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Trav1A0A075B5Z4 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Trav1A0A075B5Z4 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
Trav1A0A075B5Z4 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
Trav1A0A075B5Z4 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Trav1A0A075B5Z4 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
Trav1A0A075B5Z4 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Trav1A0A075B5Z4 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Trav1A0A075B5Z4 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trav1A0A075B5Z4 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trav1A0A075B5Z4 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
Trav1A0A075B5Z4 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
Trav1A0A075B5Z4 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trav1A0A075B5Z4 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trav1A0A075B5Z4 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Trav1A0A075B5Z4 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trav1A0A075B5Z4 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Trav1A0A075B5Z4 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Trav1A0A075B5Z4 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Trav1A0A075B5Z4 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Trav1A0A075B5Z4 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Trav1A0A075B5Z4 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC24.08■■□□□ 1.45
Trav1A0A075B5Z4 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
Trav1A0A075B5Z4 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Trav1A0A075B5Z4 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Trav1A0A075B5Z4 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
Trav1A0A075B5Z4 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Trav1A0A075B5Z4 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
Trav1A0A075B5Z4 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Trav1A0A075B5Z4 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Trav1A0A075B5Z4 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC24■■□□□ 1.43
Trav1A0A075B5Z4 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC23.97■■□□□ 1.43
Trav1A0A075B5Z4 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Trav1A0A075B5Z4 Gm26115-201ENSMUST00000175605 87 ntBASIC23.96■■□□□ 1.43
Trav1A0A075B5Z4 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Trav1A0A075B5Z4 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Trav1A0A075B5Z4 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
Trav1A0A075B5Z4 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC23.94■■□□□ 1.42
Trav1A0A075B5Z4 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Trav1A0A075B5Z4 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
Trav1A0A075B5Z4 Gm8109-201ENSMUST00000194076 746 ntBASIC23.93■■□□□ 1.42
Trav1A0A075B5Z4 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Trav1A0A075B5Z4 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Trav1A0A075B5Z4 Zxda-201ENSMUST00000117281 2621 ntBASIC23.92■■□□□ 1.42
Trav1A0A075B5Z4 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trav1A0A075B5Z4 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trav1A0A075B5Z4 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trav1A0A075B5Z4 Gm9905-201ENSMUST00000065740 1845 ntBASIC23.91■■□□□ 1.42
Trav1A0A075B5Z4 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
Trav1A0A075B5Z4 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC23.9■■□□□ 1.42
Trav1A0A075B5Z4 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
Trav1A0A075B5Z4 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Trav1A0A075B5Z4 Gm6206-201ENSMUST00000133472 2199 ntBASIC23.86■■□□□ 1.41
Trav1A0A075B5Z4 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC23.85■■□□□ 1.41
Trav1A0A075B5Z4 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Trav1A0A075B5Z4 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Trav1A0A075B5Z4 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC23.85■■□□□ 1.41
Trav1A0A075B5Z4 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
Trav1A0A075B5Z4 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC23.82■■□□□ 1.4
Trav1A0A075B5Z4 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Trav1A0A075B5Z4 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Trav1A0A075B5Z4 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
Trav1A0A075B5Z4 Gm6345-201ENSMUST00000180378 1691 ntBASIC23.79■■□□□ 1.4
Retrieved 100 of 76,532 protein–RNA pairs in 83.7 ms