Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trav6-1A0A075B5Z8 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trav6-1A0A075B5Z8 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trav6-1A0A075B5Z8 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trav6-1A0A075B5Z8 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trav6-1A0A075B5Z8 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC16.63■□□□□ 0.25
Trav6-1A0A075B5Z8 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC16.63■□□□□ 0.25
Trav6-1A0A075B5Z8 Gm5131-201ENSMUST00000212776 1238 ntBASIC16.63■□□□□ 0.25
Trav6-1A0A075B5Z8 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Trav6-1A0A075B5Z8 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trav6-1A0A075B5Z8 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trav6-1A0A075B5Z8 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trav6-1A0A075B5Z8 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC16.62■□□□□ 0.25
Trav6-1A0A075B5Z8 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trav6-1A0A075B5Z8 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Trav6-1A0A075B5Z8 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Trav6-1A0A075B5Z8 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trav6-1A0A075B5Z8 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trav6-1A0A075B5Z8 Gm10616-201ENSMUST00000205285 2127 ntBASIC16.62■□□□□ 0.25
Trav6-1A0A075B5Z8 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trav6-1A0A075B5Z8 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trav6-1A0A075B5Z8 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trav6-1A0A075B5Z8 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trav6-1A0A075B5Z8 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Trav6-1A0A075B5Z8 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6-1A0A075B5Z8 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6-1A0A075B5Z8 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6-1A0A075B5Z8 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6-1A0A075B5Z8 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6-1A0A075B5Z8 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6-1A0A075B5Z8 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC16.61■□□□□ 0.25
Trav6-1A0A075B5Z8 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6-1A0A075B5Z8 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6-1A0A075B5Z8 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6-1A0A075B5Z8 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6-1A0A075B5Z8 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6-1A0A075B5Z8 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-1A0A075B5Z8 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-1A0A075B5Z8 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-1A0A075B5Z8 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-1A0A075B5Z8 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-1A0A075B5Z8 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-1A0A075B5Z8 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-1A0A075B5Z8 AC122428.2-201ENSMUST00000216321 1832 ntBASIC16.6■□□□□ 0.25
Trav6-1A0A075B5Z8 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-1A0A075B5Z8 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-1A0A075B5Z8 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-1A0A075B5Z8 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC16.6■□□□□ 0.25
Trav6-1A0A075B5Z8 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-1A0A075B5Z8 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Trav6-1A0A075B5Z8 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-1A0A075B5Z8 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-1A0A075B5Z8 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-1A0A075B5Z8 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-1A0A075B5Z8 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-1A0A075B5Z8 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-1A0A075B5Z8 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-1A0A075B5Z8 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-1A0A075B5Z8 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-1A0A075B5Z8 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Trav6-1A0A075B5Z8 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-1A0A075B5Z8 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Trav6-1A0A075B5Z8 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC16.59■□□□□ 0.25
Trav6-1A0A075B5Z8 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-1A0A075B5Z8 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC16.59■□□□□ 0.25
Trav6-1A0A075B5Z8 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-1A0A075B5Z8 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-1A0A075B5Z8 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trav6-1A0A075B5Z8 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Trav6-1A0A075B5Z8 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trav6-1A0A075B5Z8 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Trav6-1A0A075B5Z8 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6-1A0A075B5Z8 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6-1A0A075B5Z8 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6-1A0A075B5Z8 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC16.58■□□□□ 0.24
Trav6-1A0A075B5Z8 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC16.58■□□□□ 0.24
Trav6-1A0A075B5Z8 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-1A0A075B5Z8 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-1A0A075B5Z8 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-1A0A075B5Z8 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-1A0A075B5Z8 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-1A0A075B5Z8 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-1A0A075B5Z8 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
Trav6-1A0A075B5Z8 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Trav6-1A0A075B5Z8 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-1A0A075B5Z8 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC16.57■□□□□ 0.24
Trav6-1A0A075B5Z8 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-1A0A075B5Z8 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC16.56■□□□□ 0.24
Trav6-1A0A075B5Z8 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6-1A0A075B5Z8 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6-1A0A075B5Z8 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6-1A0A075B5Z8 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Trav6-1A0A075B5Z8 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6-1A0A075B5Z8 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6-1A0A075B5Z8 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6-1A0A075B5Z8 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6-1A0A075B5Z8 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6-1A0A075B5Z8 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6-1A0A075B5Z8 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6-1A0A075B5Z8 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms